Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RK98_RS10580 | Genome accession | NZ_CP026958 |
| Coordinates | 1991391..1991816 (+) | Length | 141 a.a. |
| NCBI ID | WP_000934774.1 | Uniprot ID | Q932A8 |
| Organism | Staphylococcus aureus strain FDAARGOS_40 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1986391..1996816
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RK98_RS10510 (RK98_10510) | - | 1986412..1986741 (-) | 330 | WP_000429766.1 | helix-turn-helix domain-containing protein | - |
| RK98_RS10515 (RK98_10515) | - | 1986902..1987093 (+) | 192 | WP_001115060.1 | helix-turn-helix transcriptional regulator | - |
| RK98_RS10520 (RK98_10520) | - | 1987182..1987325 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| RK98_RS10525 (RK98_10525) | - | 1987315..1987524 (-) | 210 | WP_000642492.1 | hypothetical protein | - |
| RK98_RS10530 (RK98_10530) | - | 1987581..1988360 (+) | 780 | WP_001148557.1 | phage antirepressor | - |
| RK98_RS10535 (RK98_10535) | tscA | 1988361..1988585 (+) | 225 | WP_000187184.1 | type II toxin-antitoxin system antitoxin TscA | - |
| RK98_RS10540 (RK98_10540) | - | 1988625..1988768 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| RK98_RS10545 (RK98_10545) | - | 1988790..1989437 (-) | 648 | WP_001838167.1 | hypothetical protein | - |
| RK98_RS10550 (RK98_10550) | - | 1989508..1989729 (+) | 222 | WP_000977378.1 | hypothetical protein | - |
| RK98_RS10555 (RK98_10555) | - | 1989722..1989883 (+) | 162 | WP_000066007.1 | DUF1270 domain-containing protein | - |
| RK98_RS10560 (RK98_10560) | - | 1989976..1990278 (+) | 303 | WP_000165363.1 | DUF2482 family protein | - |
| RK98_RS10565 (RK98_10565) | - | 1990283..1990543 (+) | 261 | WP_000291068.1 | DUF1108 family protein | - |
| RK98_RS10570 (RK98_10570) | - | 1990553..1990774 (+) | 222 | WP_000815401.1 | DUF2483 family protein | - |
| RK98_RS10575 (RK98_10575) | - | 1990767..1991391 (+) | 625 | Protein_1952 | DUF1071 domain-containing protein | - |
| RK98_RS10580 (RK98_10580) | ssb | 1991391..1991816 (+) | 426 | WP_000934774.1 | single-stranded DNA-binding protein | Machinery gene |
| RK98_RS10585 (RK98_10585) | - | 1991827..1992378 (+) | 552 | WP_001004505.1 | NUMOD4 domain-containing protein | - |
| RK98_RS10590 (RK98_10590) | - | 1992379..1993053 (+) | 675 | WP_001121803.1 | putative HNHc nuclease | - |
| RK98_RS10595 (RK98_10595) | - | 1993193..1993474 (-) | 282 | WP_000414755.1 | hypothetical protein | - |
| RK98_RS10605 (RK98_10605) | - | 1993539..1994270 (+) | 732 | WP_000132051.1 | helix-turn-helix domain-containing protein | - |
| RK98_RS10610 (RK98_10610) | - | 1994283..1995068 (+) | 786 | WP_000443353.1 | ATP-binding protein | - |
| RK98_RS10615 (RK98_10615) | - | 1995065..1995223 (+) | 159 | WP_000628836.1 | hypothetical protein | - |
| RK98_RS10620 (RK98_10620) | - | 1995236..1995457 (+) | 222 | WP_001123695.1 | DUF3269 family protein | - |
| RK98_RS10625 (RK98_10625) | - | 1995467..1995871 (+) | 405 | WP_000049784.1 | DUF1064 domain-containing protein | - |
| RK98_RS10630 (RK98_10630) | - | 1995876..1996061 (+) | 186 | WP_001187242.1 | DUF3113 family protein | - |
| RK98_RS10635 (RK98_10635) | - | 1996062..1996433 (+) | 372 | WP_001140289.1 | SA1788 family PVL leukocidin-associated protein | - |
| RK98_RS10640 (RK98_10640) | - | 1996434..1996682 (+) | 249 | WP_001126846.1 | phi PVL orf 51-like protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15909.51 Da Isoelectric Point: 6.3751
>NTDB_id=273845 RK98_RS10580 WP_000934774.1 1991391..1991816(+) (ssb) [Staphylococcus aureus strain FDAARGOS_40]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
NYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYQQQRQTQTGNNPFDNNADSIEDLPF
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
NYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYQQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=273845 RK98_RS10580 WP_000934774.1 1991391..1991816(+) (ssb) [Staphylococcus aureus strain FDAARGOS_40]
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGTGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGT
AACTATGAAAACAAAGACGGGCAACGTGTATTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGTGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGT
AACTATGAAAACAAAGACGGGCAACGTGTATTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.631 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
82.243 |
75.887 |
0.624 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.262 |
100 |
0.433 |
| ssbA | Streptococcus mutans UA159 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.915 |
83.688 |
0.376 |