Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   C3766_RS16845 Genome accession   NZ_CP026649
Coordinates   3398576..3398935 (+) Length   119 a.a.
NCBI ID   WP_026683911.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain R11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3393576..3403935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3766_RS16830 (C3766_16830) - 3394492..3397293 (+) 2802 WP_017550307.1 DEAD/DEAH box helicase -
  C3766_RS16835 (C3766_16835) - 3397381..3397815 (+) 435 WP_014096781.1 DUF4944 domain-containing protein -
  C3766_RS16840 (C3766_16840) - 3397847..3398269 (-) 423 WP_014096780.1 YwpF-like family protein -
  C3766_RS16845 (C3766_16845) ssbB 3398576..3398935 (+) 360 WP_026683911.1 single-stranded DNA-binding protein Machinery gene
  C3766_RS18105 - 3398942..3399106 (+) 165 WP_013860712.1 hypothetical protein -
  C3766_RS16850 (C3766_16850) fabZ 3399294..3399719 (-) 426 WP_104851680.1 3-hydroxyacyl-ACP dehydratase FabZ -
  C3766_RS16855 (C3766_16855) - 3399847..3400677 (-) 831 WP_104851681.1 flagellar hook-basal body protein -
  C3766_RS16860 (C3766_16860) - 3400705..3401493 (-) 789 WP_014096776.1 flagellar hook-basal body protein -
  C3766_RS16865 (C3766_16865) - 3401532..3402532 (-) 1001 Protein_3122 rod shape-determining protein -
  C3766_RS16870 (C3766_16870) spoIIID 3402921..3403187 (-) 267 WP_014096774.1 sporulation transcriptional regulator SpoIIID -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13441.33 Da        Isoelectric Point: 9.9022

>NTDB_id=271260 C3766_RS16845 WP_026683911.1 3398576..3398935(+) (ssbB) [Heyndrickxia coagulans strain R11]
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKDGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGG

Nucleotide


Download         Length: 360 bp        

>NTDB_id=271260 C3766_RS16845 WP_026683911.1 3398576..3398935(+) (ssbB) [Heyndrickxia coagulans strain R11]
TTGATTAACCAGGTCACATTAGTCGGAAGGCTTACAAAAGATCCGGATCTTCACTACACGGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGCCGGATTCAGACCCGC
CATTATGATAATAAAGACGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
AGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGGGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.909

92.437

0.563
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.83

89.076

0.471
  ssb Latilactobacillus sakei subsp. sakei 23K

46.552

97.479

0.454
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.241

97.479

0.412
  ssbB/cilA Streptococcus mitis NCTC 12261

42.593

90.756

0.387
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.593

90.756

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

41.667

90.756

0.378
  ssbB/cilA Streptococcus pneumoniae D39

41.667

90.756

0.378
  ssbB/cilA Streptococcus pneumoniae R6

41.667

90.756

0.378
  ssbB/cilA Streptococcus mitis SK321

41.667

90.756

0.378
  ssbA Streptococcus mutans UA159

41.667

90.756

0.378

Multiple sequence alignment