Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C3F34_RS05105 Genome accession   NZ_CP026412
Coordinates   1094268..1095494 (+) Length   408 a.a.
NCBI ID   WP_044739185.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1089268..1100494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS05065 (C3F34_05065) rimP 1089812..1090336 (-) 525 WP_104441190.1 ribosome maturation factor RimP -
  C3F34_RS05090 (C3F34_05090) secG 1091118..1091447 (-) 330 WP_016168397.1 preprotein translocase subunit SecG -
  C3F34_RS05095 (C3F34_05095) tpiA 1091461..1092252 (-) 792 WP_104441191.1 triose-phosphate isomerase -
  C3F34_RS05100 (C3F34_05100) pilB 1092533..1094239 (+) 1707 WP_104441192.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C3F34_RS05105 (C3F34_05105) pilC 1094268..1095494 (+) 1227 WP_044739185.1 type II secretion system F family protein Machinery gene
  C3F34_RS20695 (C3F34_05110) pilD 1095494..1096354 (+) 861 WP_044739184.1 prepilin peptidase Machinery gene
  C3F34_RS05115 (C3F34_05115) coaE 1096357..1096974 (+) 618 WP_044739183.1 dephospho-CoA kinase -
  C3F34_RS05120 (C3F34_05120) - 1096971..1097888 (-) 918 WP_044739182.1 DMT family transporter -
  C3F34_RS05125 (C3F34_05125) rlmB 1097922..1098674 (-) 753 WP_044739181.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C3F34_RS05130 (C3F34_05130) - 1098811..1099134 (-) 324 WP_016168405.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44815.30 Da        Isoelectric Point: 9.8732

>NTDB_id=269171 C3F34_RS05105 WP_044739185.1 1094268..1095494(+) (pilC) [Acinetobacter sp. ACNIH2]
MAVKKAQMMPTFSYEGVDRKGAKIKGELPARNMALAKVTLRKQGVAIKTIREKRKNILEGLLKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFILIIAIGVLIA
VFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEQAVLKIRDDVA
TGQQLQFAMRVTDKFPAMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=269171 C3F34_RS05105 WP_044739185.1 1094268..1095494(+) (pilC) [Acinetobacter sp. ACNIH2]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAGTTATGAAGGAGTTGACCGCAAAGGGGCAAAAATTAAAGGGGA
ACTCCCTGCACGGAATATGGCTTTAGCTAAAGTCACCTTACGCAAGCAAGGGGTTGCGATTAAAACCATTCGAGAAAAAC
GCAAGAATATTCTTGAAGGTTTGCTAAAAAAGAAAGTCAGTACACTGGACATCACCATTTTCACACGCCAATTGGCAACC
ATGATGAAAGCGGGTGTACCCTTGGTACAAAGCTTTGAAATTGTGGCTGAGGGTTTAGAAAACCCAGCAATGCGTGAAGT
CGTCCTCGGAATTAAGGGTGAAGTCGAAGGTGGTAACACCTTTGCTGGCGCATTAAAAAAATACCCACAATACTTTGACA
ATTTATTTTGCTCGCTGGTTGAATCTGGTGAACAATCAGGTGCGCTTGAAACCATGCTAGATCGCGTCGCGATTTATAAA
GAAAAAAGTGAACTCCTGAAGCAAAAAATCAAAAAAGCCATGAAATATCCAGCAACAGTGATTGTGGTGGCGGTTATTGT
CACCATCATTTTGATGGTGAAGGTTGTTCCTGTATTCCAAGATTTATTTAGCTCATTTGGCGCTGATCTTCCAGCTTTCA
CCAAAATGGTCGTCAATATGTCAGAGTGGATGCAAAAATACTGGTTCATTCTGATTATTGCGATTGGCGTATTGATTGCC
GTATTTCTTGAAGCGAAAAAACGGAGTAAAAAATTCCGCGACTTTTTGGATAAAGCAGCATTAAAAGCACCTATTTTTGG
TGATCTGGTTTATAAAGCCATTATCGCCCGTTACAGCCGTACTTTAGCCACGACTTTTGCTGCCGGCGTTCCACTGATTG
ATGCTTTAGAATCGACTGCTGGGGCGACCAATAATGTTGTCTATGAACAAGCAGTACTTAAAATCCGAGATGATGTTGCA
ACTGGTCAACAATTGCAGTTTGCTATGCGGGTCACTGATAAATTCCCTGCGATGGCAGTACAAATGGTTGCTATTGGTGA
AGAATCTGGTGCATTGGATGCTATGTTGGATAAAGTCGCCACACACTATGAAAATGAAGTCGATAACGCCGTTGATGGCT
TAACCTCAATGATGGAGCCCCTAATCATGGCGATTCTTGGCGTACTTGTCGGTGGTCTGGTGATTGCCATGTACCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.441

100

0.904
  pilC Acinetobacter baylyi ADP1

84.804

100

0.848
  pilC Pseudomonas stutzeri DSM 10701

60.741

99.265

0.603
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria meningitidis 44/76-A

46.366

97.794

0.453
  pilG Neisseria gonorrhoeae MS11

46.366

97.794

0.453
  pilC Vibrio cholerae strain A1552

42.157

100

0.422
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment