Detailed information NTG0269206

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C3F34_RS20695
• Genome accession: NZ_CP026412
• Coordinates: 1095494..1096354 (+)
• Length: 286 a.a.
• NCBI ID: WP_044739184.1
• Uniprot ID: A0A2L0HTA7
• Organism: Acinetobacter sp. ACNIH2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1090494..1101354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3F34_RS05090 (C3F34_05090)	secG	1091118..1091447 (-)	330	WP_016168397.1	preprotein translocase subunit SecG	-
C3F34_RS05095 (C3F34_05095)	tpiA	1091461..1092252 (-)	792	WP_104441191.1	triose-phosphate isomerase	-
C3F34_RS05100 (C3F34_05100)	pilB	1092533..1094239 (+)	1707	WP_104441192.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C3F34_RS05105 (C3F34_05105)	pilC	1094268..1095494 (+)	1227	WP_044739185.1	type II secretion system F family protein	Machinery gene
C3F34_RS20695 (C3F34_05110)	pilD	1095494..1096354 (+)	861	WP_044739184.1	prepilin peptidase	Machinery gene
C3F34_RS05115 (C3F34_05115)	coaE	1096357..1096974 (+)	618	WP_044739183.1	dephospho-CoA kinase	-
C3F34_RS05120 (C3F34_05120)	-	1096971..1097888 (-)	918	WP_044739182.1	DMT family transporter	-
C3F34_RS05125 (C3F34_05125)	rlmB	1097922..1098674 (-)	753	WP_044739181.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
C3F34_RS05130 (C3F34_05130)	-	1098811..1099134 (-)	324	WP_016168405.1	pyrimidine/purine nucleoside phosphorylase	-
C3F34_RS05135 (C3F34_05135)	recN	1099463..1101124 (+)	1662	WP_104441193.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32123.57 Da
• Isoelectric Point: 8.4347

>NTDB_id=269206 C3F34_RS20695 WP_044739184.1 1095494..1096354(+) (pilD) [Acinetobacter sp. ACNIH2]
MQDLLYYFIQNPTALYIAVGIFSLCIGSFLNVVIYRTPKMMEQEWRQDCQLLLHPEQAILDEKKLSLSQPASTCPKCKKP
IRWYQNIPVISWLVLRGKCGTCSNPISIRYPLVELLTAICALTVVVVYGPTLQMLFGLILTYTLIALTFIDFDTQLLPDR
YTLPLAALGLGINSYSIYTSPSVAIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLLLPLIILLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWVAFLWGEQIMKVYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=269206 C3F34_RS20695 WP_044739184.1 1095494..1096354(+) (pilD) [Acinetobacter sp. ACNIH2]
ATGCAAGATTTACTTTATTATTTTATTCAAAACCCAACTGCACTTTATATCGCGGTTGGGATTTTTAGTTTATGCATTGG
TAGTTTTTTAAATGTTGTCATCTATCGTACTCCCAAAATGATGGAACAAGAGTGGCGTCAAGACTGTCAACTGCTCCTTC
ACCCTGAACAAGCCATTTTGGATGAGAAAAAACTCAGTCTCAGCCAGCCAGCTTCCACCTGTCCAAAATGTAAGAAACCT
ATTCGTTGGTATCAGAATATCCCTGTCATTAGCTGGTTAGTATTACGTGGTAAATGTGGAACCTGTAGTAACCCGATCAG
TATCCGCTACCCTTTAGTTGAATTGCTGACTGCCATCTGCGCTTTGACAGTCGTCGTAGTCTATGGTCCAACCCTTCAGA
TGCTATTTGGTTTAATTCTCACTTATACTCTGATTGCACTGACTTTTATCGATTTCGATACCCAGCTTCTACCTGATCGC
TATACCTTACCATTGGCAGCATTAGGACTGGGAATTAACAGCTATTCTATTTATACCTCACCAAGCGTTGCCATCTGGGG
CTATATCATTGGTTTTCTTTGTCTTTGGATTGTGTATTACCTGTTTAAAATTATTACAGGTAAAGAAGGCATGGGCTATG
GTGACTTTAAATTACTGGCTGCTTTAGGGGCTTGGATGGGTCCTTTACTGCTGCCATTGATCATACTGCTGTCTTCTTTG
GTTGGAGCAATCATTGGAATCATTCTTCTCAAAATCCGTAAAGAGAATCAACCTTTTGCTTTTGGCCCCTATATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGTGAACAGATTATGAAAGTTTATCTAGGACAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

3D structure

• AlphaFold DB: A0A2L0HTA7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	80.702	99.65	0.804
pilD	Acinetobacter nosocomialis M2	80.702	99.65	0.804
pilD	Vibrio campbellii strain DS40M4	52.083	100	0.524
pilD	Vibrio cholerae strain A1552	52.281	99.65	0.521
pilD	Neisseria gonorrhoeae MS11	45.196	98.252	0.444