Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C2U39_RS02700 Genome accession   NZ_CP026222
Coordinates   523569..524810 (-) Length   413 a.a.
NCBI ID   WP_103259473.1    Uniprot ID   -
Organism   Aeromonas sp. ASNIH3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 518569..529810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U39_RS02670 (C2U39_02670) - 519364..520548 (+) 1185 WP_103259471.1 tetratricopeptide repeat protein -
  C2U39_RS02675 (C2U39_02675) mutT 520557..520961 (+) 405 WP_171864957.1 8-oxo-dGTP diphosphatase MutT -
  C2U39_RS02680 (C2U39_02680) yacG 521019..521213 (-) 195 WP_039040499.1 DNA gyrase inhibitor YacG -
  C2U39_RS02685 (C2U39_02685) zapD 521224..521946 (-) 723 WP_010675825.1 cell division protein ZapD -
  C2U39_RS02690 (C2U39_02690) coaE 521984..522598 (-) 615 WP_103259472.1 dephospho-CoA kinase -
  C2U39_RS02695 (C2U39_02695) pilD 522617..523492 (-) 876 WP_042880167.1 A24 family peptidase Machinery gene
  C2U39_RS02700 (C2U39_02700) pilC 523569..524810 (-) 1242 WP_103259473.1 type II secretion system F family protein Machinery gene
  C2U39_RS02705 (C2U39_02705) pilB 524938..526653 (-) 1716 WP_176722689.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  C2U39_RS24770 (C2U39_02710) - 526644..527069 (-) 426 WP_324826121.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  C2U39_RS02715 (C2U39_02715) - 527074..528021 (-) 948 WP_019706001.1 IS30-like element ISAs2 family transposase -
  C2U39_RS02720 (C2U39_02720) nadC 528442..529305 (-) 864 WP_103259475.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C2U39_RS02725 (C2U39_02725) - 529309..529779 (-) 471 WP_042015101.1 retropepsin-like aspartic protease -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45496.41 Da        Isoelectric Point: 9.9380

>NTDB_id=267883 C2U39_RS02700 WP_103259473.1 523569..524810(-) (pilC) [Aeromonas sp. ASNIH3]
MATLAQKRNAPKKVFSYRWHGVNRKGQKVSGELQADSITTVKAELRKQGVNVTRVNKQSQGLFSKGGAKIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIAADVETGTPLSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
AIYREKNEALKSKIKKAMFYPSMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTRFVIAISRFMQEWWYAIFGGAA
LAVFFYVRAWRKSQKVRDNTDKFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTATMAIR
NEVVAGMQINVAMRTVDLFPDMVTQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=267883 C2U39_RS02700 WP_103259473.1 523569..524810(-) (pilC) [Aeromonas sp. ASNIH3]
ATGGCCACATTAGCTCAAAAACGCAACGCACCGAAAAAAGTCTTCTCCTACCGCTGGCACGGCGTCAACCGCAAGGGACA
GAAGGTCTCAGGCGAGCTGCAAGCCGACAGTATCACCACCGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
GGGTCAACAAGCAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACTACCATGCTTTCCGCCGGCGTGCCTCTGGTGCAGAGTCTTCAGATCATTGCCCGCGGCCACGAGAAAGCGGC
GGTACGCGAACTCATCGGCCAGATCGCCGCCGATGTGGAAACGGGCACCCCGCTCTCGGAGGCGTTACGCCGTCATCCCC
GCCACTTCGACGACCTCTATTGCGATCTGGTCGAGGCCGGGGAGCAATCCGGTGCCCTGGAGACCATCTACGACCGTATC
GCCATCTACCGCGAGAAGAACGAAGCCCTCAAATCCAAGATCAAGAAGGCCATGTTCTATCCGTCCATGGTCATTCTGGT
GGCCATCGTCGTCACCTCCATCCTGCTGCTCTTCGTCATTCCCCAGTTCGAGGATATCTTCAAGAGCTTCGGTGCCGAGC
TGCCCGCCTTTACCCGGTTCGTCATCGCCATCTCCCGCTTCATGCAGGAGTGGTGGTACGCCATCTTTGGCGGCGCGGCT
CTCGCCGTCTTCTTCTATGTGCGGGCCTGGCGAAAATCCCAGAAAGTCAGGGACAACACGGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCAACATACTGCACAAGGCTGCCATGGCCCGTTTTGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TACCGCTGGTGGATGCCCTGGTCTCGGCGGCCGGAGCATCGGGCAACTATGTCTATCGCACTGCGACCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTCGCCATGCGCACCGTGGATCTTTTCCCCGACATGGTGACCCAGATGGT
GATGATCGGTGAGGAATCCGGCGCCATCGACGACATGCTCTCCAAGGTCGCCGCCATTTTCGAACAGGAAGTGGACGATA
TGGTCGACGGCCTCACCAGCCTGCTCGAACCCATCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTCGTGGCC
ATGTACCTCCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.566

95.884

0.542
  pilC Legionella pneumophila strain ERS1305867

52.099

98.063

0.511
  pilC Acinetobacter baumannii D1279779

52.369

97.094

0.508
  pilC Acinetobacter baylyi ADP1

50.728

99.758

0.506
  pilC Vibrio cholerae strain A1552

47.368

96.61

0.458
  pilC Vibrio campbellii strain DS40M4

45.226

96.368

0.436
  pilG Neisseria meningitidis 44/76-A

41.602

93.705

0.39
  pilG Neisseria gonorrhoeae MS11

41.602

93.705

0.39
  pilC Thermus thermophilus HB27

39

96.852

0.378

Multiple sequence alignment