Detailed information NTG0267882

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C2U39_RS02695
• Genome accession: NZ_CP026222
• Coordinates: 522617..523492 (-)
• Length: 291 a.a.
• NCBI ID: WP_042880167.1
• Uniprot ID: -
• Organism: Aeromonas sp. ASNIH3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 517617..528492

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2U39_RS02670 (C2U39_02670)	-	519364..520548 (+)	1185	WP_103259471.1	tetratricopeptide repeat protein	-
C2U39_RS02675 (C2U39_02675)	mutT	520557..520961 (+)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
C2U39_RS02680 (C2U39_02680)	yacG	521019..521213 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
C2U39_RS02685 (C2U39_02685)	zapD	521224..521946 (-)	723	WP_010675825.1	cell division protein ZapD	-
C2U39_RS02690 (C2U39_02690)	coaE	521984..522598 (-)	615	WP_103259472.1	dephospho-CoA kinase	-
C2U39_RS02695 (C2U39_02695)	pilD	522617..523492 (-)	876	WP_042880167.1	A24 family peptidase	Machinery gene
C2U39_RS02700 (C2U39_02700)	pilC	523569..524810 (-)	1242	WP_103259473.1	type II secretion system F family protein	Machinery gene
C2U39_RS02705 (C2U39_02705)	pilB	524938..526653 (-)	1716	WP_176722689.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
C2U39_RS24770 (C2U39_02710)	-	526644..527069 (-)	426	WP_324826121.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
C2U39_RS02715 (C2U39_02715)	-	527074..528021 (-)	948	WP_019706001.1	IS30-like element ISAs2 family transposase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32037.20 Da
• Isoelectric Point: 7.0913

>NTDB_id=267882 C2U39_RS02695 WP_042880167.1 522617..523492(-) (pilD) [Aeromonas sp. ASNIH3]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEATPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADAVIGTMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=267882 C2U39_RS02695 WP_042880167.1 522617..523492(-) (pilD) [Aeromonas sp. ASNIH3]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTTATCCATCGTCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGCGACTCCTCCTGCAACTGGACGATACAACCTCATGGTGCCCCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCCCGCTATCCCCTGGTCGAGCTGCTCACCGCCTTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCTGGCTGGG
GCACCCTTGCCGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGCGGTAAT
CGGTACCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCTTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.282	0.601
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	52.33	95.876	0.502
pilD	Acinetobacter nosocomialis M2	52.33	95.876	0.502
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46