Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C1S73_RS13770 Genome accession   NZ_CP025792
Coordinates   2858878..2860101 (-) Length   407 a.a.
NCBI ID   WP_038870485.1    Uniprot ID   A0A2A2NCG7
Organism   Vibrio jasicida 090810c     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2853878..2865101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS13730 rpsP 2853980..2854228 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  C1S73_RS13735 rimM 2854255..2854803 (+) 549 WP_038870471.1 ribosome maturation factor RimM -
  C1S73_RS13740 trmD 2854831..2855574 (+) 744 WP_038870473.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  C1S73_RS13745 rplS 2855616..2855969 (+) 354 WP_038870475.1 50S ribosomal protein L19 -
  C1S73_RS13750 yacG 2856295..2856489 (-) 195 WP_038870477.1 DNA gyrase inhibitor YacG -
  C1S73_RS13755 zapD 2856554..2857294 (-) 741 WP_038870479.1 cell division protein ZapD -
  C1S73_RS13760 coaE 2857322..2857936 (-) 615 WP_038870481.1 dephospho-CoA kinase -
  C1S73_RS13765 pilD 2857937..2858806 (-) 870 WP_038870483.1 A24 family peptidase Machinery gene
  C1S73_RS13770 pilC 2858878..2860101 (-) 1224 WP_038870485.1 type II secretion system F family protein Machinery gene
  C1S73_RS13775 pilB 2860133..2861818 (-) 1686 WP_038870486.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C1S73_RS13780 pilA 2861818..2862282 (-) 465 WP_038870488.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  C1S73_RS13785 nadC 2862547..2863434 (-) 888 WP_038870489.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C1S73_RS13790 ampD 2863527..2864078 (+) 552 WP_038870491.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45047.34 Da        Isoelectric Point: 10.4683

>NTDB_id=263803 C1S73_RS13770 WP_038870485.1 2858878..2860101(-) (pilC) [Vibrio jasicida 090810c]
MKTNAPQLKSFRWKGTNSSGKKTSGQVLAMTEIEVRERLDAQHIKIKKLKKSSISFITKLSHRVKGKDITVFTRQIATML
MTGVPIVQALKLVSENHRKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLPQVFERLATYREK
SEQLKAKVIKALIYPAMVVLVALGVSYLMLTKVIPEFEKMFVGFGADLPAFTQMVLNLSAWTQNWGPFIGLSALSLFISS
RIMAKRSDSFRLLLARSSLRFPILGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=263803 C1S73_RS13770 WP_038870485.1 2858878..2860101(-) (pilC) [Vibrio jasicida 090810c]
ATGAAAACTAACGCCCCACAACTTAAAAGTTTCCGCTGGAAAGGCACGAACAGTTCAGGGAAGAAAACCTCCGGACAAGT
GTTAGCCATGACAGAAATTGAAGTGCGAGAACGCCTGGATGCTCAACACATTAAAATTAAGAAGCTTAAGAAAAGCAGTA
TTTCTTTTATCACGAAACTGAGTCATCGAGTCAAAGGCAAAGACATTACGGTATTTACCCGTCAAATCGCTACCATGTTA
ATGACTGGCGTTCCCATCGTTCAAGCTCTGAAGCTTGTCTCAGAAAACCATAGAAAAGCTGAGATGAAATCAATACTGAT
GAGCGTAACACGAGCAGTAGAAGCAGGTACGCCAATGTCCAAAGCCATGCGCACCGCCAGCACGCATTTTGATCCACTCT
ATACTGATTTAATCGCAACCGGTGAGCAGTCAGGTAACTTACCTCAGGTATTTGAACGTCTTGCGACTTACCGAGAAAAA
AGCGAACAATTGAAAGCAAAAGTTATCAAAGCACTCATCTATCCGGCGATGGTAGTTTTGGTCGCGCTAGGGGTCTCCTA
CCTCATGCTCACCAAAGTGATACCTGAGTTCGAAAAAATGTTTGTTGGCTTTGGCGCCGACCTGCCTGCATTTACTCAAA
TGGTCTTAAATCTTTCGGCATGGACACAAAATTGGGGGCCTTTTATTGGGCTCAGTGCATTAAGCTTATTTATTTCCTCC
CGTATCATGGCTAAACGTTCGGACTCTTTCCGATTGTTGTTGGCTCGATCGAGCTTAAGATTTCCGATACTCGGCCCCGT
CTTATCCAAAGCAGCGATTGCGAAATTCAGCCGTACTCTTGCAACCAGTTTTACCGCCGGTATCCCCATTTTGACAAGCT
TAAAAACCACCTCTAAAACATCCGGTAATATGCATTATCAACTTGCCATCGAAGAGGTCTACCGAGATACCGCAGCGGGT
ATGCCAATGTACATCGCAATGCGCAATTGCAACGTATTCCCAGAATTGGTGCTGCAAATGGTAATGATCGGTGAAGAATC
CGGACGTTTAGACGATATGCTCAACAAAATTGCCGCGATCTATGAGTTTGAAGTGGATAACACCGTCGACAATCTGAGTA
AAATTTTAGAGCCGTTGATCATTGTTTTTCTTGGGGTCGTCGTTGGCGGATTGGTCACAGCAATGTACTTACCAATCTTT
AACTTAATGAGCGTATTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A2NCG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

93.612

100

0.936
  pilC Vibrio cholerae strain A1552

74

98.28

0.727
  pilC Acinetobacter baylyi ADP1

43.25

98.28

0.425
  pilC Acinetobacter baumannii D1279779

41.523

100

0.415
  pilC Legionella pneumophila strain ERS1305867

40.541

100

0.405
  pilC Pseudomonas stutzeri DSM 10701

40.75

98.28

0.4
  pilG Neisseria meningitidis 44/76-A

40.049

100

0.4
  pilG Neisseria gonorrhoeae MS11

40.049

100

0.4

Multiple sequence alignment