Detailed information NTG0263802

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C1S73_RS13765
• Genome accession: NZ_CP025792
• Coordinates: 2857937..2858806 (-)
• Length: 289 a.a.
• NCBI ID: WP_038870483.1
• Uniprot ID: -
• Organism: Vibrio jasicida 090810c
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2852937..2863806

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1S73_RS13730	rpsP	2853980..2854228 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
C1S73_RS13735	rimM	2854255..2854803 (+)	549	WP_038870471.1	ribosome maturation factor RimM	-
C1S73_RS13740	trmD	2854831..2855574 (+)	744	WP_038870473.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
C1S73_RS13745	rplS	2855616..2855969 (+)	354	WP_038870475.1	50S ribosomal protein L19	-
C1S73_RS13750	yacG	2856295..2856489 (-)	195	WP_038870477.1	DNA gyrase inhibitor YacG	-
C1S73_RS13755	zapD	2856554..2857294 (-)	741	WP_038870479.1	cell division protein ZapD	-
C1S73_RS13760	coaE	2857322..2857936 (-)	615	WP_038870481.1	dephospho-CoA kinase	-
C1S73_RS13765	pilD	2857937..2858806 (-)	870	WP_038870483.1	A24 family peptidase	Machinery gene
C1S73_RS13770	pilC	2858878..2860101 (-)	1224	WP_038870485.1	type II secretion system F family protein	Machinery gene
C1S73_RS13775	pilB	2860133..2861818 (-)	1686	WP_038870486.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C1S73_RS13780	pilA	2861818..2862282 (-)	465	WP_038870488.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
C1S73_RS13785	nadC	2862547..2863434 (-)	888	WP_038870489.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32413.56 Da
• Isoelectric Point: 7.9246

>NTDB_id=263802 C1S73_RS13765 WP_038870483.1 2857937..2858806(-) (pilD) [Vibrio jasicida 090810c]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEAPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCKSSISARYPLIELLTAFGSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALSGVSPVNLQDAIIGAMAGYLCLWSVYWVFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=263802 C1S73_RS13765 WP_038870483.1 2857937..2858806(-) (pilD) [Vibrio jasicida 090810c]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTGCCACAATTTTTGGTTTGATCGTGGGTAGCTTCCTCAA
CGTGGTTATTTACCGCTTACCCAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAAA
TTGAAGCACCGAAGGAAACACTGACCTTAAGTGTCCCTCGTTCTTCCTGCCAACAGTGCGGAACGCCGATCCGCATTCGT
GACAACATTCCTGTCATTAGCTGGCTGCTTCTGAAAGGCAAATGCCATAACTGTAAATCCTCGATTAGTGCTCGCTACCC
TCTCATCGAATTGCTTACTGCTTTTGGTTCGGGTTTTATCGCGTTTCACTTCGGTTTTAGTTACTTCACTGTTGCGCTGG
TTTTCTTTACCTTTGTACTGATTGCCGCCACGTTTATCGACCTCGATACTATGTTGCTACCAGACCAACTAACTCTGCCA
TTAATGTGGGCAGGTATTGCACTTGCATTGTCTGGCGTTAGTCCTGTTAACCTACAAGACGCCATCATTGGCGCGATGGC
TGGTTACTTGTGTCTTTGGAGTGTTTACTGGGTATTTAAGCTTCTGACTGGCAAAGAGGGCATGGGCTATGGTGACTTCA
AACTGCTTGCTGCCCTTGGTGCATGGTTAGGCTGGCAATCACTGCCGATGATCATTTTACTGTCGTCGGTTGTGGGCGTT
ATTTTCGGCCTGATACAACTGCGTTTACAAAAACAGGGTATCGAAAAAGCGTTCCCCTTTGGCCCTTACCTTGCGATTGC
AGGTTGGGTGAGCCTTATTTGGGGTAACCAGATTCTGAACTGGTACTTCACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	94.81	100	0.948
pilD	Vibrio cholerae strain A1552	74.653	99.654	0.744
pilD	Acinetobacter baumannii D1279779	51.079	96.194	0.491
pilD	Acinetobacter nosocomialis M2	50.719	96.194	0.488
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443