Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | C0099_RS04425 | Genome accession | NZ_CP025682 |
| Coordinates | 920867..922102 (-) | Length | 411 a.a. |
| NCBI ID | WP_102246323.1 | Uniprot ID | A0A2I6S4R8 |
| Organism | Pseudazoarcus pumilus strain SY39 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 915867..927102
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0099_RS04405 (C0099_04405) | - | 915961..917634 (-) | 1674 | WP_102246320.1 | response regulator | - |
| C0099_RS04410 (C0099_04410) | aspS | 917728..919527 (-) | 1800 | WP_102246321.1 | aspartate--tRNA ligase | - |
| C0099_RS04415 (C0099_04415) | - | 919595..919876 (-) | 282 | WP_102246322.1 | FmdB family zinc ribbon protein | - |
| C0099_RS04420 (C0099_04420) | pilD | 919969..920820 (-) | 852 | WP_102248379.1 | A24 family peptidase | Machinery gene |
| C0099_RS04425 (C0099_04425) | pilC | 920867..922102 (-) | 1236 | WP_102246323.1 | type II secretion system F family protein | Machinery gene |
| C0099_RS04430 (C0099_04430) | pilB | 922120..923835 (-) | 1716 | WP_102246324.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| C0099_RS04435 (C0099_04435) | - | 923924..925219 (-) | 1296 | WP_102246325.1 | HlyC/CorC family transporter | - |
| C0099_RS04440 (C0099_04440) | - | 925296..926114 (-) | 819 | WP_102246326.1 | inner membrane protein YpjD | - |
Sequence
Protein
Download Length: 411 a.a. Molecular weight: 44660.50 Da Isoelectric Point: 10.0215
>NTDB_id=263219 C0099_RS04425 WP_102246323.1 920867..922102(-) (pilC) [Pseudazoarcus pumilus strain SY39]
MATSAPARRSSPLRPREHLFNWEGKDKNGKMVRGELRASGENVVHVTMRRQGIIVTRVKKQKLSRGRRIGEKDIALFTRQ
LATMMRSGVPLLQAFDIGIKGATNSSFARLLNDIRNDVETGASLAAAFSRHPQYFDRLFCNLVAAGEQAGILDNLLERLA
TYKEKILAIKSKIKSAMFYPAAVVVVAGLVIAVMMLFVIPEFKKVFESFGADLPAPTLLVLAISDAFVAWWYVILGAIVA
TVMITAYLYKRSPAAQNLLDRALLRLPVIGDIVRKATVARWARTLSTMFAAGVPLVEALDSVGGASGNHVYLTATKQIQT
EVSTGTSLTVAMQNAEVFPVMVVQMVSIGEESGELDAMLGKVADFYEQEVDDAVAGLSQLLEPAIMVFLGTIIGGLVIAM
YLPIFKLGGVI
MATSAPARRSSPLRPREHLFNWEGKDKNGKMVRGELRASGENVVHVTMRRQGIIVTRVKKQKLSRGRRIGEKDIALFTRQ
LATMMRSGVPLLQAFDIGIKGATNSSFARLLNDIRNDVETGASLAAAFSRHPQYFDRLFCNLVAAGEQAGILDNLLERLA
TYKEKILAIKSKIKSAMFYPAAVVVVAGLVIAVMMLFVIPEFKKVFESFGADLPAPTLLVLAISDAFVAWWYVILGAIVA
TVMITAYLYKRSPAAQNLLDRALLRLPVIGDIVRKATVARWARTLSTMFAAGVPLVEALDSVGGASGNHVYLTATKQIQT
EVSTGTSLTVAMQNAEVFPVMVVQMVSIGEESGELDAMLGKVADFYEQEVDDAVAGLSQLLEPAIMVFLGTIIGGLVIAM
YLPIFKLGGVI
Nucleotide
Download Length: 1236 bp
>NTDB_id=263219 C0099_RS04425 WP_102246323.1 920867..922102(-) (pilC) [Pseudazoarcus pumilus strain SY39]
ATGGCGACTTCAGCACCAGCACGACGCTCTTCCCCCCTGCGCCCCAGGGAGCATCTGTTCAACTGGGAGGGCAAGGACAA
GAACGGCAAGATGGTGCGCGGCGAACTGCGCGCCAGCGGCGAAAACGTGGTGCATGTCACGATGCGCCGCCAGGGCATCA
TCGTCACCCGCGTCAAGAAGCAGAAGCTCTCGCGCGGGCGGCGCATCGGCGAGAAGGACATCGCGCTGTTCACGCGCCAG
CTCGCGACCATGATGCGCTCGGGCGTGCCGCTGCTGCAGGCCTTCGACATCGGTATCAAGGGCGCGACCAACTCGAGCTT
CGCGCGGCTGCTCAACGACATCCGCAACGACGTGGAAACCGGCGCCAGCCTCGCGGCCGCCTTCTCCCGCCATCCGCAGT
ACTTCGACCGCCTGTTCTGCAACCTGGTCGCCGCAGGCGAGCAGGCCGGCATCCTCGACAACCTGCTCGAGCGCCTGGCC
ACCTACAAGGAAAAGATCCTCGCCATCAAGAGCAAGATCAAGTCGGCGATGTTCTACCCGGCCGCGGTGGTCGTCGTCGC
CGGCCTGGTGATCGCGGTGATGATGCTGTTCGTCATCCCCGAATTCAAGAAGGTCTTCGAGAGCTTCGGCGCCGACCTGC
CGGCACCCACGCTGCTGGTGCTGGCGATCTCCGACGCCTTCGTCGCGTGGTGGTACGTGATCCTGGGCGCGATCGTCGCC
ACCGTGATGATCACGGCCTATCTGTATAAACGCTCGCCCGCAGCACAGAATCTCCTCGACCGCGCCCTGCTGCGGCTGCC
CGTCATCGGCGACATCGTGCGCAAAGCCACCGTGGCGCGCTGGGCGCGCACGCTGTCGACGATGTTCGCCGCCGGCGTGC
CGCTGGTGGAGGCGCTCGATTCGGTCGGCGGCGCGTCCGGCAACCACGTCTACCTGACCGCTACGAAGCAGATCCAGACC
GAGGTTTCCACCGGCACCAGCCTCACCGTCGCCATGCAGAACGCCGAGGTCTTCCCGGTGATGGTCGTGCAGATGGTTTC
CATCGGCGAGGAGTCGGGCGAACTCGACGCCATGCTCGGCAAGGTCGCCGACTTCTACGAGCAGGAAGTCGATGACGCCG
TGGCGGGCCTGTCGCAACTGCTCGAGCCGGCCATCATGGTCTTCCTCGGCACCATCATCGGCGGTCTCGTGATCGCGATG
TATCTGCCCATCTTCAAGCTCGGCGGCGTCATCTGA
ATGGCGACTTCAGCACCAGCACGACGCTCTTCCCCCCTGCGCCCCAGGGAGCATCTGTTCAACTGGGAGGGCAAGGACAA
GAACGGCAAGATGGTGCGCGGCGAACTGCGCGCCAGCGGCGAAAACGTGGTGCATGTCACGATGCGCCGCCAGGGCATCA
TCGTCACCCGCGTCAAGAAGCAGAAGCTCTCGCGCGGGCGGCGCATCGGCGAGAAGGACATCGCGCTGTTCACGCGCCAG
CTCGCGACCATGATGCGCTCGGGCGTGCCGCTGCTGCAGGCCTTCGACATCGGTATCAAGGGCGCGACCAACTCGAGCTT
CGCGCGGCTGCTCAACGACATCCGCAACGACGTGGAAACCGGCGCCAGCCTCGCGGCCGCCTTCTCCCGCCATCCGCAGT
ACTTCGACCGCCTGTTCTGCAACCTGGTCGCCGCAGGCGAGCAGGCCGGCATCCTCGACAACCTGCTCGAGCGCCTGGCC
ACCTACAAGGAAAAGATCCTCGCCATCAAGAGCAAGATCAAGTCGGCGATGTTCTACCCGGCCGCGGTGGTCGTCGTCGC
CGGCCTGGTGATCGCGGTGATGATGCTGTTCGTCATCCCCGAATTCAAGAAGGTCTTCGAGAGCTTCGGCGCCGACCTGC
CGGCACCCACGCTGCTGGTGCTGGCGATCTCCGACGCCTTCGTCGCGTGGTGGTACGTGATCCTGGGCGCGATCGTCGCC
ACCGTGATGATCACGGCCTATCTGTATAAACGCTCGCCCGCAGCACAGAATCTCCTCGACCGCGCCCTGCTGCGGCTGCC
CGTCATCGGCGACATCGTGCGCAAAGCCACCGTGGCGCGCTGGGCGCGCACGCTGTCGACGATGTTCGCCGCCGGCGTGC
CGCTGGTGGAGGCGCTCGATTCGGTCGGCGGCGCGTCCGGCAACCACGTCTACCTGACCGCTACGAAGCAGATCCAGACC
GAGGTTTCCACCGGCACCAGCCTCACCGTCGCCATGCAGAACGCCGAGGTCTTCCCGGTGATGGTCGTGCAGATGGTTTC
CATCGGCGAGGAGTCGGGCGAACTCGACGCCATGCTCGGCAAGGTCGCCGACTTCTACGAGCAGGAAGTCGATGACGCCG
TGGCGGGCCTGTCGCAACTGCTCGAGCCGGCCATCATGGTCTTCCTCGGCACCATCATCGGCGGTCTCGTGATCGCGATG
TATCTGCCCATCTTCAAGCTCGGCGGCGTCATCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
51.629 |
97.08 |
0.501 |
| pilC | Legionella pneumophila strain ERS1305867 |
50 |
99.27 |
0.496 |
| pilC | Acinetobacter baylyi ADP1 |
48.995 |
96.837 |
0.474 |
| pilG | Neisseria gonorrhoeae MS11 |
49.118 |
96.594 |
0.474 |
| pilG | Neisseria meningitidis 44/76-A |
49.118 |
96.594 |
0.474 |
| pilC | Acinetobacter baumannii D1279779 |
47.355 |
96.594 |
0.457 |
| pilC | Vibrio cholerae strain A1552 |
40.831 |
99.513 |
0.406 |
| pilC | Vibrio campbellii strain DS40M4 |
40.547 |
97.81 |
0.397 |
| pilC | Thermus thermophilus HB27 |
39.012 |
98.54 |
0.384 |