Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | LLG50_RS02010 | Genome accession | NZ_CP025500 |
| Coordinates | 402524..402913 (+) | Length | 129 a.a. |
| NCBI ID | WP_010905314.1 | Uniprot ID | S6EQX8 |
| Organism | Lactococcus lactis subsp. lactis strain G50 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 367658..424689 | 402524..402913 | within | 0 |
Gene organization within MGE regions
Location: 367658..424689
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLG50_RS01840 (LLG50_01840) | - | 367724..368059 (+) | 336 | WP_012898553.1 | hypothetical protein | - |
| LLG50_RS01845 (LLG50_01845) | - | 368062..368568 (+) | 507 | WP_012898552.1 | DUF961 family protein | - |
| LLG50_RS01850 (LLG50_01850) | - | 368578..370197 (+) | 1620 | WP_103054445.1 | FtsK/SpoIIIE domain-containing protein | - |
| LLG50_RS01855 (LLG50_01855) | - | 370577..371854 (+) | 1278 | WP_103054446.1 | replication initiation factor domain-containing protein | - |
| LLG50_RS01860 (LLG50_01860) | - | 371879..372142 (+) | 264 | WP_103054447.1 | hypothetical protein | - |
| LLG50_RS01865 (LLG50_01865) | - | 372179..372439 (+) | 261 | WP_103054448.1 | hypothetical protein | - |
| LLG50_RS01870 (LLG50_01870) | - | 372553..372813 (+) | 261 | WP_103054449.1 | histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase | - |
| LLG50_RS11780 (LLG50_01875) | - | 372901..373326 (+) | 426 | WP_272938650.1 | helix-turn-helix domain-containing protein | - |
| LLG50_RS01880 (LLG50_01880) | - | 373415..373840 (+) | 426 | WP_103054450.1 | hypothetical protein | - |
| LLG50_RS01885 (LLG50_01885) | - | 374155..376998 (+) | 2844 | WP_161494983.1 | SpaA isopeptide-forming pilin-related protein | - |
| LLG50_RS01890 (LLG50_01890) | - | 377123..377323 (+) | 201 | WP_058225862.1 | hypothetical protein | - |
| LLG50_RS01895 (LLG50_01895) | - | 377327..378595 (+) | 1269 | WP_012898547.1 | conjugal transfer protein | - |
| LLG50_RS01900 (LLG50_01900) | - | 378601..378834 (+) | 234 | WP_012898546.1 | TcpD family membrane protein | - |
| LLG50_RS01905 (LLG50_01905) | - | 378843..379208 (+) | 366 | WP_017865115.1 | TcpE family conjugal transfer membrane protein | - |
| LLG50_RS01910 (LLG50_01910) | - | 379208..381775 (+) | 2568 | WP_103054451.1 | ATP-binding protein | - |
| LLG50_RS01915 (LLG50_01915) | - | 381776..383821 (+) | 2046 | WP_103054452.1 | MnhB domain-containing protein | - |
| LLG50_RS01920 (LLG50_01920) | - | 383836..384900 (+) | 1065 | WP_103054453.1 | phage tail tip lysozyme | - |
| LLG50_RS01925 (LLG50_01925) | - | 384995..385489 (+) | 495 | WP_103054454.1 | hypothetical protein | - |
| LLG50_RS01930 (LLG50_01930) | - | 385514..386005 (+) | 492 | WP_103054455.1 | antirestriction protein ArdA | - |
| LLG50_RS01935 (LLG50_01935) | - | 386064..386273 (+) | 210 | WP_103054456.1 | DNA-binding protein | - |
| LLG50_RS01940 (LLG50_01940) | - | 386325..387485 (+) | 1161 | WP_103054457.1 | tyrosine-type recombinase/integrase | - |
| LLG50_RS01945 (LLG50_01945) | thiI | 387645..388865 (+) | 1221 | WP_103054458.1 | tRNA uracil 4-sulfurtransferase ThiI | - |
| LLG50_RS01950 (LLG50_01950) | - | 389078..390481 (+) | 1404 | WP_103054459.1 | MFS transporter | - |
| LLG50_RS01955 (LLG50_01955) | - | 390643..391248 (+) | 606 | WP_015425833.1 | FMN-dependent NADH-azoreductase | - |
| LLG50_RS01960 (LLG50_01960) | - | 391344..391778 (+) | 435 | WP_039114601.1 | OsmC family protein | - |
| LLG50_RS01965 (LLG50_01965) | - | 391814..393856 (-) | 2043 | WP_003131601.1 | cation:proton antiporter | - |
| LLG50_RS01970 (LLG50_01970) | - | 393947..394417 (-) | 471 | WP_010905310.1 | hypothetical protein | - |
| LLG50_RS01975 (LLG50_01975) | tyrS | 394540..395799 (-) | 1260 | WP_003131599.1 | tyrosine--tRNA ligase | - |
| LLG50_RS01980 (LLG50_01980) | - | 395944..398349 (+) | 2406 | WP_103054460.1 | transglycosylase domain-containing protein | - |
| LLG50_RS01985 (LLG50_01985) | pepA | 398407..399474 (-) | 1068 | WP_103054461.1 | glutamyl aminopeptidase | - |
| LLG50_RS01990 (LLG50_01990) | - | 399577..399861 (+) | 285 | WP_012897223.1 | hypothetical protein | - |
| LLG50_RS01995 (LLG50_01995) | - | 399903..400220 (+) | 318 | WP_003131595.1 | thioredoxin family protein | - |
| LLG50_RS02000 (LLG50_02000) | ytpR | 400306..400932 (+) | 627 | WP_003131594.1 | YtpR family tRNA-binding protein | - |
| LLG50_RS02005 (LLG50_02005) | nox | 401095..402435 (+) | 1341 | WP_058219163.1 | H2O-forming NADH oxidase | - |
| LLG50_RS02010 (LLG50_02010) | ssbB | 402524..402913 (+) | 390 | WP_010905314.1 | single-stranded DNA-binding protein | Machinery gene |
| LLG50_RS02015 (LLG50_02015) | groES | 403033..403317 (+) | 285 | WP_003131589.1 | co-chaperone GroES | - |
| LLG50_RS02020 (LLG50_02020) | groL | 403405..405033 (+) | 1629 | WP_058206244.1 | chaperonin GroEL | - |
| LLG50_RS02025 (LLG50_02025) | - | 405078..405890 (-) | 813 | WP_003131583.1 | MBL fold metallo-hydrolase | - |
| LLG50_RS02030 (LLG50_02030) | - | 406061..407503 (-) | 1443 | WP_010905315.1 | sensor histidine kinase | - |
| LLG50_RS02035 (LLG50_02035) | yycF | 407496..408197 (-) | 702 | WP_003131580.1 | response regulator YycF | - |
| LLG50_RS02040 (LLG50_02040) | tmk | 408375..409010 (+) | 636 | WP_103054462.1 | dTMP kinase | - |
| LLG50_RS02045 (LLG50_02045) | - | 409143..410003 (+) | 861 | WP_057719679.1 | DNA polymerase III subunit delta' | - |
| LLG50_RS02050 (LLG50_02050) | ricT | 410055..410837 (+) | 783 | WP_010905316.1 | PSP1 domain-containing protein | - |
| LLG50_RS02055 (LLG50_02055) | yabA | 410830..411156 (+) | 327 | WP_003131570.1 | DNA replication initiation control protein YabA | - |
| LLG50_RS02060 (LLG50_02060) | rsmI | 411156..412031 (+) | 876 | WP_103054463.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| LLG50_RS02065 (LLG50_02065) | - | 412108..412299 (-) | 192 | WP_003131566.1 | hypothetical protein | - |
| LLG50_RS02070 (LLG50_02070) | mvk | 412362..413294 (-) | 933 | WP_003131564.1 | mevalonate kinase | - |
| LLG50_RS02075 (LLG50_02075) | mvaD | 413600..414556 (+) | 957 | WP_058219167.1 | diphosphomevalonate decarboxylase | - |
| LLG50_RS02080 (LLG50_02080) | - | 414543..415532 (+) | 990 | WP_021721904.1 | mevalonate kinase | - |
| LLG50_RS02085 (LLG50_02085) | fni | 415587..416630 (+) | 1044 | WP_103054464.1 | type 2 isopentenyl-diphosphate Delta-isomerase | - |
| LLG50_RS02090 (LLG50_02090) | - | 416788..417408 (+) | 621 | WP_003131560.1 | superoxide dismutase | - |
| LLG50_RS02095 (LLG50_02095) | - | 417656..420010 (+) | 2355 | WP_103054465.1 | carbon starvation CstA family protein | - |
| LLG50_RS02100 (LLG50_02100) | - | 420312..421652 (+) | 1341 | WP_017864136.1 | DEAD/DEAH box helicase | - |
| LLG50_RS02105 (LLG50_02105) | - | 421656..422240 (+) | 585 | WP_095586708.1 | YdcF family protein | - |
| LLG50_RS02110 (LLG50_02110) | - | 422396..423142 (+) | 747 | WP_010905323.1 | MurR/RpiR family transcriptional regulator | - |
| LLG50_RS02115 (LLG50_02115) | - | 423384..423710 (+) | 327 | WP_003131553.1 | PTS sugar transporter subunit IIB | - |
| LLG50_RS02120 (LLG50_02120) | - | 423795..424145 (+) | 351 | WP_003131552.1 | PTS lactose/cellobiose transporter subunit IIA | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14672.73 Da Isoelectric Point: 8.3705
>NTDB_id=262083 LLG50_RS02010 WP_010905314.1 402524..402913(+) (ssbB) [Lactococcus lactis subsp. lactis strain G50]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=262083 LLG50_RS02010 WP_010905314.1 402524..402913(+) (ssbB) [Lactococcus lactis subsp. lactis strain G50]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
90.698 |
100 |
0.907 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60.769 |
100 |
0.612 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.923 |
100 |
0.574 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis SK321 |
56.154 |
100 |
0.566 |
| ssbA | Streptococcus mutans UA159 |
55.385 |
100 |
0.558 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
43.75 |
86.822 |
0.38 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
44.762 |
81.395 |
0.364 |