Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CXB49_RS02135 Genome accession   NZ_CP025429
Coordinates   498526..499749 (+) Length   407 a.a.
NCBI ID   WP_101706876.1    Uniprot ID   A0A2H5DRN3
Organism   Chromobacterium sp. ATCC 53434     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 493526..504749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB49_RS02115 (CXB49_02115) - 493848..494669 (+) 822 WP_101706872.1 inner membrane protein YpjD -
  CXB49_RS02120 (CXB49_02120) comE 494723..495046 (+) 324 WP_101706873.1 ComEA family DNA-binding protein Machinery gene
  CXB49_RS02125 (CXB49_02125) - 495439..496563 (+) 1125 WP_101706874.1 porin -
  CXB49_RS02130 (CXB49_02130) pilF 496779..498485 (+) 1707 WP_101706875.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CXB49_RS02135 (CXB49_02135) pilC 498526..499749 (+) 1224 WP_101706876.1 type II secretion system F family protein Machinery gene
  CXB49_RS02140 (CXB49_02140) - 499749..500669 (+) 921 WP_101706877.1 A24 family peptidase -
  CXB49_RS02145 (CXB49_02145) coaE 500654..501268 (+) 615 WP_101706878.1 dephospho-CoA kinase -
  CXB49_RS02150 (CXB49_02150) zapD 501305..502063 (+) 759 WP_101706879.1 cell division protein ZapD -
  CXB49_RS02155 (CXB49_02155) yacG 502067..502258 (+) 192 WP_101706880.1 DNA gyrase inhibitor YacG -
  CXB49_RS02160 (CXB49_02160) - 502314..503555 (-) 1242 WP_101706881.1 N-acetylmuramoyl-L-alanine amidase -
  CXB49_RS02165 (CXB49_02165) tsaE 503513..504007 (-) 495 WP_101706882.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44850.88 Da        Isoelectric Point: 10.0335

>NTDB_id=261264 CXB49_RS02135 WP_101706876.1 498526..499749(+) (pilC) [Chromobacterium sp. ATCC 53434]
MATATAKKASPGYIWEWEGKDKSGKMIRGELRAESETVAKTQLRRQGINVVKIRKRRAGFGKRITEKDIALFTRQLSTMM
RAGVPLLQAFDIAAKGHSNPAVTRMLLEVRADVETGLSLAEAFRKRPLYFDKLFCNIIAAGETGGVLDTLLDKLATYKEK
VMAIKAKIKSAMIYPSAIVGTAFIITAVIMIYVIPAFKDLFSGFGANLPAPTLFVIWLSDQFVHFWWLIFGVIFGGLFAF
FYAFKRTPKMQEQMDRILLKLPVIGDIIRKATIARWARTLSTLFAAGVPLVEALDSVGGAAGNQVYAEATRRIQMDVSTG
SSLNFSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGVLIGGLVIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=261264 CXB49_RS02135 WP_101706876.1 498526..499749(+) (pilC) [Chromobacterium sp. ATCC 53434]
ATGGCGACAGCGACGGCGAAAAAGGCAAGTCCCGGTTACATCTGGGAATGGGAAGGCAAGGACAAGTCCGGCAAGATGAT
ACGCGGCGAGTTGCGCGCCGAGTCGGAGACGGTGGCCAAGACCCAGCTGCGGCGGCAGGGCATCAATGTGGTCAAGATCC
GCAAGCGCCGCGCCGGTTTCGGCAAGCGGATCACCGAGAAGGACATCGCGCTGTTCACCCGGCAGCTGTCGACAATGATG
CGCGCCGGCGTGCCCTTGCTGCAGGCTTTCGACATCGCCGCCAAGGGCCACAGCAATCCGGCGGTGACGCGGATGCTGCT
GGAGGTGCGCGCCGACGTCGAAACCGGCCTGTCGCTGGCCGAGGCCTTCCGCAAGCGGCCGCTGTACTTCGACAAGCTGT
TCTGCAACATCATCGCCGCCGGCGAGACCGGCGGCGTGCTGGACACGCTGCTGGACAAGCTGGCCACCTACAAGGAAAAG
GTGATGGCGATCAAGGCCAAGATCAAGTCGGCGATGATCTATCCGTCGGCCATCGTCGGCACCGCCTTCATCATCACCGC
GGTCATCATGATCTACGTGATCCCGGCGTTCAAGGACCTGTTTTCCGGCTTCGGCGCCAACCTGCCGGCGCCGACGCTGT
TCGTGATCTGGCTGTCGGACCAGTTCGTCCATTTCTGGTGGCTGATCTTCGGCGTCATCTTCGGCGGCCTGTTCGCGTTT
TTCTACGCCTTCAAGCGCACGCCGAAGATGCAGGAGCAGATGGATCGCATCCTGCTGAAGCTGCCGGTGATCGGCGACAT
CATACGCAAGGCGACCATCGCCCGCTGGGCGCGCACGCTGTCGACGCTGTTCGCCGCCGGCGTGCCGCTGGTGGAGGCGC
TGGACTCGGTCGGCGGCGCCGCCGGCAATCAGGTCTACGCCGAGGCCACCCGCCGCATCCAGATGGACGTCAGCACCGGC
TCCAGCCTCAACTTCTCGATGCAGCGCACCGATCTGTTCCCGAACATGGTGCTGCAGATGACCTCGATAGGCGAGGAATC
GGGTTCGCTGGACCAGATGCTCGACAAAGTGGCCGACTTTTACGAGGAAGAAGTGGATAATGCGGTGGCCGCGCTGTCCA
GCCTGCTGGAGCCGGCGATCATGGTGATTCTGGGGGTATTGATCGGCGGTCTGGTGATCGCGATGTATATGCCTATCTTC
AAAATGGGTCAGGTGGTGGGGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H5DRN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.263

0.538
  pilC Legionella pneumophila strain ERS1305867

53.465

99.263

0.531
  pilG Neisseria gonorrhoeae MS11

52.174

96.069

0.501
  pilG Neisseria meningitidis 44/76-A

52.174

96.069

0.501
  pilC Acinetobacter baylyi ADP1

49.754

99.754

0.496
  pilC Acinetobacter baumannii D1279779

49.383

99.509

0.491
  pilC Vibrio cholerae strain A1552

38.386

100

0.386
  pilC Vibrio campbellii strain DS40M4

38.442

97.789

0.376
  pilC Thermus thermophilus HB27

36.842

98.034

0.361

Multiple sequence alignment