Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CXB49_RS02120 Genome accession   NZ_CP025429
Coordinates   494723..495046 (+) Length   107 a.a.
NCBI ID   WP_101706873.1    Uniprot ID   A0A2H5DRN7
Organism   Chromobacterium sp. ATCC 53434     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 489723..500046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB49_RS02100 (CXB49_02100) purB 489996..491366 (-) 1371 WP_101706869.1 adenylosuccinate lyase -
  CXB49_RS02105 (CXB49_02105) - 491426..492334 (-) 909 WP_101706870.1 RimK family alpha-L-glutamate ligase -
  CXB49_RS02110 (CXB49_02110) ffh 492381..493736 (-) 1356 WP_101706871.1 signal recognition particle protein -
  CXB49_RS02115 (CXB49_02115) - 493848..494669 (+) 822 WP_101706872.1 inner membrane protein YpjD -
  CXB49_RS02120 (CXB49_02120) comE 494723..495046 (+) 324 WP_101706873.1 ComEA family DNA-binding protein Machinery gene
  CXB49_RS02125 (CXB49_02125) - 495439..496563 (+) 1125 WP_101706874.1 porin -
  CXB49_RS02130 (CXB49_02130) pilF 496779..498485 (+) 1707 WP_101706875.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CXB49_RS02135 (CXB49_02135) pilC 498526..499749 (+) 1224 WP_101706876.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11214.34 Da        Isoelectric Point: 10.7097

>NTDB_id=261262 CXB49_RS02120 WP_101706873.1 494723..495046(+) (comE) [Chromobacterium sp. ATCC 53434]
MKKLFAILAVLLLSCNLAWAAVNLNTATAQQLESLNGIGPVKAKAIVDYRTKNGPFKTVDDLKKVPGIGDKTLDKLRKEL
TVGGAAPAAKPLAKPAKPTEKPAPAAK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=261262 CXB49_RS02120 WP_101706873.1 494723..495046(+) (comE) [Chromobacterium sp. ATCC 53434]
ATGAAGAAGCTGTTCGCCATCCTCGCCGTTCTGCTGCTGTCGTGCAATCTGGCCTGGGCCGCCGTCAATCTGAACACCGC
CACTGCCCAGCAACTGGAGTCGCTGAACGGCATCGGGCCGGTCAAGGCCAAGGCCATCGTCGATTACCGCACCAAGAACG
GTCCGTTCAAGACCGTCGACGATTTGAAGAAAGTGCCCGGCATCGGGGACAAGACGCTGGACAAGCTGCGCAAGGAGCTG
ACCGTCGGCGGCGCCGCGCCGGCGGCCAAGCCTCTGGCCAAACCGGCGAAACCGACGGAGAAGCCGGCGCCCGCCGCCAA
GTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H5DRN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

55.446

94.393

0.523
  comE Neisseria gonorrhoeae MS11

55.446

94.393

0.523
  comE Neisseria gonorrhoeae MS11

55.446

94.393

0.523
  comE Neisseria gonorrhoeae MS11

55.446

94.393

0.523
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

76.636

0.383

Multiple sequence alignment