Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CR922_RS08815 Genome accession   NZ_CP025400
Coordinates   1662537..1662929 (-) Length   130 a.a.
NCBI ID   WP_011227579.1    Uniprot ID   A0A2S4DWC9
Organism   Streptococcus thermophilus strain EPS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1657537..1667929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR922_RS08780 dapD 1657840..1658538 (-) 699 WP_002951996.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  CR922_RS10800 - 1658624..1659378 (-) 755 Protein_1645 HAD family hydrolase -
  CR922_RS08790 - 1659493..1660326 (-) 834 WP_011227577.1 putative RNA methyltransferase -
  CR922_RS08800 - 1660695..1660862 (+) 168 WP_002945733.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  CR922_RS10805 - 1660915..1661151 (+) 237 WP_041827105.1 hypothetical protein -
  CR922_RS08810 tadA 1661259..1661777 (-) 519 WP_011227578.1 tRNA adenosine(34) deaminase TadA -
  CR922_RS08815 ssbA 1662537..1662929 (-) 393 WP_011227579.1 single-stranded DNA-binding protein Machinery gene
  CR922_RS08820 - 1663134..1663361 (-) 228 WP_003095911.1 sulfurtransferase TusA family protein -
  CR922_RS08825 - 1663376..1664407 (-) 1032 WP_011227580.1 YeeE/YedE family protein -
  CR922_RS08830 ytpR 1664545..1665168 (-) 624 WP_002952017.1 YtpR family tRNA-binding protein -
  CR922_RS08835 - 1665178..1665492 (-) 315 WP_011226613.1 thioredoxin family protein -
  CR922_RS08840 - 1665489..1665773 (-) 285 WP_041827106.1 DUF4651 domain-containing protein -
  CR922_RS08845 pepA 1665873..1666940 (+) 1068 WP_002952022.1 glutamyl aminopeptidase -
  CR922_RS08850 proC 1666956..1667726 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14773.70 Da        Isoelectric Point: 5.9275

>NTDB_id=261011 CR922_RS08815 WP_011227579.1 1662537..1662929(-) (ssbA) [Streptococcus thermophilus strain EPS]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide


Download         Length: 393 bp        

>NTDB_id=261011 CR922_RS08815 WP_011227579.1 1662537..1662929(-) (ssbA) [Streptococcus thermophilus strain EPS]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGCCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S4DWC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.153

100

0.808
  ssbB/cilA Streptococcus pneumoniae TIGR4

75.573

100

0.762
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.762
  ssbB/cilA Streptococcus mitis SK321

74.809

100

0.754
  ssbB/cilA Streptococcus pneumoniae R6

74.809

100

0.754
  ssbB/cilA Streptococcus pneumoniae Rx1

74.809

100

0.754
  ssbB/cilA Streptococcus pneumoniae D39

74.809

100

0.754
  ssbB/cilA Streptococcus mitis NCTC 12261

73.282

100

0.738
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

86.154

0.531
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

81.538

0.392
  ssb Latilactobacillus sakei subsp. sakei 23K

47.17

81.538

0.385

Multiple sequence alignment