Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CWI26_RS00910 Genome accession   NZ_CP025043
Coordinates   150192..150587 (+) Length   131 a.a.
NCBI ID   WP_014637328.1    Uniprot ID   G7SD76
Organism   Streptococcus suis strain AH681     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 145192..155587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS00885 (CWI26_00885) - 147082..147366 (+) 285 WP_002940015.1 DUF4651 domain-containing protein -
  CWI26_RS00890 (CWI26_00890) - 147363..147683 (+) 321 WP_053864564.1 thioredoxin family protein -
  CWI26_RS00895 (CWI26_00895) - 147728..148684 (+) 957 WP_100881048.1 DUF1002 domain-containing protein -
  CWI26_RS00900 (CWI26_00900) ytpR 148703..149326 (+) 624 WP_029176335.1 YtpR family tRNA-binding protein -
  CWI26_RS00905 (CWI26_00905) - 149358..150137 (-) 780 WP_029176334.1 DUF2785 domain-containing protein -
  CWI26_RS00910 (CWI26_00910) ssbA 150192..150587 (+) 396 WP_014637328.1 single-stranded DNA-binding protein Machinery gene
  CWI26_RS11920 - 150940..151101 (-) 162 WP_153958514.1 hypothetical protein -
  CWI26_RS00920 (CWI26_00920) groES 151298..151579 (+) 282 WP_024375738.1 co-chaperone GroES -
  CWI26_RS00925 (CWI26_00925) groL 151591..153213 (+) 1623 WP_100881050.1 chaperonin GroEL -
  CWI26_RS00930 (CWI26_00930) rpsL 153444..153857 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  CWI26_RS00935 (CWI26_00935) rpsG 153874..154344 (+) 471 WP_099875957.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14866.76 Da        Isoelectric Point: 5.0026

>NTDB_id=257596 CWI26_RS00910 WP_014637328.1 150192..150587(+) (ssbA) [Streptococcus suis strain AH681]
MYNKVILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=257596 CWI26_RS00910 WP_014637328.1 150192..150587(+) (ssbA) [Streptococcus suis strain AH681]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTGACGGCCCAACCCGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACAGTCGCAGTCAATCGCCGATTTAAGACAGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGGACGAGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACTGAAATCTTAGGACAATCCTTCCAGTTGCTCGAAAGCCGTGCCCA
ACGTGCCATGCGTGAAAATAACACTGGTGATGACCTAGCAGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SD76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382

Multiple sequence alignment