Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CSAL_RS11080 Genome accession   NC_007963
Coordinates   2448830..2450062 (+) Length   410 a.a.
NCBI ID   WP_011507472.1    Uniprot ID   Q1QVI2
Organism   Chromohalobacter israelensis DSM 3043     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2443830..2455062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSAL_RS11060 (Csal_2171) - 2444106..2445587 (-) 1482 WP_011507468.1 TrkH family potassium uptake protein -
  CSAL_RS11065 (Csal_2172) - 2445855..2446142 (+) 288 WP_011507469.1 hypothetical protein -
  CSAL_RS11070 (Csal_2173) - 2446272..2446712 (-) 441 WP_011507470.1 pilin -
  CSAL_RS11075 (Csal_2174) pilB 2447058..2448797 (+) 1740 WP_011507471.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CSAL_RS11080 (Csal_2175) pilC 2448830..2450062 (+) 1233 WP_011507472.1 type II secretion system F family protein Machinery gene
  CSAL_RS11085 (Csal_2176) pilD 2450178..2451020 (+) 843 WP_011507473.1 A24 family peptidase Machinery gene
  CSAL_RS11090 (Csal_2177) coaE 2451031..2451669 (+) 639 WP_011507474.1 dephospho-CoA kinase -
  CSAL_RS11095 (Csal_2178) yacG 2451671..2451901 (+) 231 WP_011507475.1 DNA gyrase inhibitor YacG -
  CSAL_RS11100 (Csal_2179) - 2452017..2452961 (-) 945 WP_011507476.1 Nudix family hydrolase -
  CSAL_RS11105 (Csal_2180) argJ 2453036..2454244 (-) 1209 WP_011507477.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45134.70 Da        Isoelectric Point: 10.4931

>NTDB_id=25741 CSAL_RS11080 WP_011507472.1 2448830..2450062(+) (pilC) [Chromohalobacter israelensis DSM 3043]
MAVATRSKAPRRVVLHRWRWKGKNSRGETIQGELVAADEMTVRQELGRQNILVKRIQRVRSPFGIGRIRPQDITLFARQM
ATMIRAGIPLLQAFSVVSESLKRPAMHHLIETLMNEVSAGASFSEALAQHPQHFDRMFVNMVEAGEQSGSLDRMLERVAS
YKEKIDSLRARVRKALYYPAAVVLVGMGVTALLLVKVVPQFESLFRGFGADLPAFTQLTIALSQWVQAYWPHLLGAFIAA
LLLVRLGIRRSPGFAYRADALMLRLPVIGDILDKSSVARFSRTLATTFSAGVPLVESLNTAAGSTGNRVYQRAIGEVREH
VASGQQLNFAMRATGRFPNLAVQMIGVGEESGALDAMLNKVADFYEEDVDTKVDALTSLLEPFIIVVLGVLVGGLVVSMY
LPIFEMGSAI

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=25741 CSAL_RS11080 WP_011507472.1 2448830..2450062(+) (pilC) [Chromohalobacter israelensis DSM 3043]
ATGGCGGTAGCGACACGTAGCAAGGCGCCACGGCGCGTCGTCCTGCATCGCTGGCGATGGAAGGGCAAGAATTCCCGTGG
CGAGACCATCCAGGGCGAGCTGGTGGCGGCAGATGAAATGACGGTGCGCCAGGAGCTCGGCCGCCAGAACATTCTGGTCA
AGCGCATCCAGCGCGTGCGCAGCCCCTTCGGCATCGGCCGCATACGCCCCCAGGACATCACCCTGTTCGCACGGCAGATG
GCGACGATGATCCGTGCCGGCATCCCGCTGCTGCAAGCCTTCAGCGTGGTGTCGGAGAGTCTCAAGCGCCCCGCCATGCA
CCACCTCATCGAGACCTTGATGAACGAAGTCTCGGCGGGGGCCAGCTTCTCCGAGGCGCTGGCCCAGCATCCGCAGCATT
TCGATCGCATGTTCGTCAACATGGTCGAGGCCGGCGAGCAGTCGGGATCGCTGGATCGCATGCTGGAGCGGGTGGCGAGC
TACAAGGAAAAGATCGACTCCCTGCGCGCGCGCGTGCGCAAGGCCCTCTATTACCCCGCCGCCGTGGTCCTGGTGGGCAT
GGGGGTCACCGCCTTGCTGCTGGTCAAGGTCGTACCTCAGTTCGAGAGCCTGTTTCGCGGCTTCGGCGCCGACTTGCCCG
CCTTCACGCAGTTGACCATTGCGCTGTCGCAGTGGGTCCAGGCGTACTGGCCGCACCTGCTCGGCGCCTTCATCGCTGCC
TTGCTGCTGGTCCGTCTCGGCATCCGTCGCTCGCCGGGCTTCGCCTACCGTGCCGATGCGCTCATGCTGCGCCTGCCGGT
CATCGGCGACATTCTGGACAAATCGTCGGTGGCGCGCTTTTCGCGCACCCTGGCGACGACCTTCAGCGCCGGGGTGCCAC
TGGTCGAATCGCTCAACACCGCAGCCGGCTCCACCGGCAATCGGGTCTACCAACGCGCCATCGGCGAGGTCCGCGAGCAT
GTCGCCAGCGGCCAGCAGCTCAACTTCGCCATGCGTGCCACCGGGCGCTTCCCCAACCTGGCGGTGCAGATGATTGGCGT
GGGCGAAGAATCCGGTGCGCTGGACGCCATGCTCAACAAGGTGGCGGATTTCTACGAGGAAGACGTCGATACCAAGGTCG
ACGCGCTGACATCGCTGCTCGAACCCTTCATCATCGTGGTGCTGGGCGTACTGGTCGGCGGCCTCGTCGTCTCGATGTAT
CTGCCGATCTTCGAAATGGGCTCGGCCATTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1QVI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.405

96.341

0.505
  pilC Acinetobacter baylyi ADP1

49.633

99.756

0.495
  pilC Legionella pneumophila strain ERS1305867

49.123

97.317

0.478
  pilC Acinetobacter baumannii D1279779

48.615

96.829

0.471
  pilC Vibrio campbellii strain DS40M4

44.853

99.512

0.446
  pilC Vibrio cholerae strain A1552

44.608

99.512

0.444
  pilG Neisseria meningitidis 44/76-A

40.302

96.829

0.39
  pilG Neisseria gonorrhoeae MS11

40.302

96.829

0.39
  pilC Thermus thermophilus HB27

36.408

100

0.366

Multiple sequence alignment