Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CSAL_RS11085 Genome accession   NC_007963
Coordinates   2450178..2451020 (+) Length   280 a.a.
NCBI ID   WP_011507473.1    Uniprot ID   Q1QVI1
Organism   Chromohalobacter israelensis DSM 3043     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2445178..2456020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSAL_RS11065 (Csal_2172) - 2445855..2446142 (+) 288 WP_011507469.1 hypothetical protein -
  CSAL_RS11070 (Csal_2173) - 2446272..2446712 (-) 441 WP_011507470.1 pilin -
  CSAL_RS11075 (Csal_2174) pilB 2447058..2448797 (+) 1740 WP_011507471.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CSAL_RS11080 (Csal_2175) pilC 2448830..2450062 (+) 1233 WP_011507472.1 type II secretion system F family protein Machinery gene
  CSAL_RS11085 (Csal_2176) pilD 2450178..2451020 (+) 843 WP_011507473.1 A24 family peptidase Machinery gene
  CSAL_RS11090 (Csal_2177) coaE 2451031..2451669 (+) 639 WP_011507474.1 dephospho-CoA kinase -
  CSAL_RS11095 (Csal_2178) yacG 2451671..2451901 (+) 231 WP_011507475.1 DNA gyrase inhibitor YacG -
  CSAL_RS11100 (Csal_2179) - 2452017..2452961 (-) 945 WP_011507476.1 Nudix family hydrolase -
  CSAL_RS11105 (Csal_2180) argJ 2453036..2454244 (-) 1209 WP_011507477.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 30809.05 Da        Isoelectric Point: 8.9749

>NTDB_id=25742 CSAL_RS11085 WP_011507473.1 2450178..2451020(+) (pilD) [Chromohalobacter israelensis DSM 3043]
MLADIPLPWLAVMAFVVGTLLGSFLNVVIVRLPVMLMQQWRQEARESLALETEDVPAYNLCTPRSQCPRCRAPIAWHDNL
PLIGWLKRRGRCAHCQGRISAQYPLVELAAGLLLFSVVMVHGATWSALAWGGLCLTLLVVAVIDLRTQLLPDIITLPLLW
AGLIYQLVFQPYWLSNAVIGALAGYLLLWGFYWLFKWITGKEGMGYGDFKLLAALGAWFGWTMLPILLILSAGLGAVIGG
LLQLTHPRLRGMPLPFGPFLALAGWVAVLFGAPLRALTGL

Nucleotide


Download         Length: 843 bp        

>NTDB_id=25742 CSAL_RS11085 WP_011507473.1 2450178..2451020(+) (pilD) [Chromohalobacter israelensis DSM 3043]
TTGTTGGCCGATATCCCCCTGCCCTGGCTGGCCGTGATGGCTTTCGTCGTGGGTACGCTGCTGGGCAGCTTTCTCAATGT
CGTCATCGTGCGCCTGCCGGTCATGCTGATGCAGCAATGGCGTCAGGAGGCGCGCGAATCGCTGGCCCTCGAGACGGAGG
ACGTGCCGGCCTACAACCTGTGCACGCCACGCTCGCAATGTCCGCGTTGCCGAGCGCCGATCGCCTGGCACGACAATCTG
CCCTTGATCGGCTGGCTCAAGCGACGCGGTCGCTGTGCGCATTGCCAGGGGCGGATCAGCGCACAATATCCTCTGGTCGA
GCTGGCCGCTGGGCTGTTGCTGTTCAGCGTGGTGATGGTGCATGGCGCGACCTGGTCCGCCCTCGCCTGGGGCGGGCTGT
GCCTGACGCTGCTGGTGGTCGCCGTCATCGACCTGCGCACGCAGCTGCTGCCCGATATCATCACGCTCCCCCTGCTCTGG
GCGGGGCTTATCTACCAGCTCGTCTTTCAGCCCTATTGGCTGAGCAACGCCGTCATCGGCGCGCTCGCCGGCTATCTGCT
GCTCTGGGGGTTCTACTGGCTCTTCAAGTGGATCACCGGCAAGGAGGGCATGGGGTACGGCGACTTCAAGCTGCTGGCGG
CGCTGGGGGCCTGGTTCGGCTGGACGATGCTGCCGATTCTGCTGATCCTTTCCGCCGGCCTGGGAGCCGTCATCGGTGGG
CTATTGCAACTCACGCACCCCCGGCTACGCGGCATGCCGCTGCCCTTCGGCCCCTTCCTCGCCCTCGCCGGCTGGGTGGC
GGTCCTCTTCGGCGCACCGCTGCGCGCCTTGACCGGTCTATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(133-239)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(16-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1QVI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50.735

97.143

0.493
  pilD Acinetobacter nosocomialis M2

50.958

93.214

0.475
  pilD Acinetobacter baumannii D1279779

50.575

93.214

0.471
  pilD Vibrio campbellii strain DS40M4

47.037

96.429

0.454
  pilD Neisseria gonorrhoeae MS11

44.487

93.929

0.418

Multiple sequence alignment