Detailed information NTG0256831

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: CV098_RS10905
• Genome accession: NZ_CP024958
• Coordinates: 2232783..2233118 (-)
• Length: 111 a.a.
• NCBI ID: WP_032948139.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain G423
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2227783..2238118

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV098_RS10860 (CV098_10860)	-	2227987..2228280 (+)	294	WP_226898169.1	pseudouridine synthase	-
CV098_RS10865 (CV098_10865)	-	2228319..2229128 (-)	810	WP_014570791.1	metal ABC transporter permease	-
CV098_RS10870 (CV098_10870)	-	2229121..2229858 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
CV098_RS10875 (CV098_10875)	-	2230035..2230877 (-)	843	WP_017865154.1	metal ABC transporter substrate-binding protein	-
CV098_RS10880 (CV098_10880)	-	2230874..2231311 (-)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
CV098_RS10885 (CV098_10885)	comGG	2231392..2231676 (-)	285	WP_017865155.1	competence type IV pilus minor pilin ComGG	Machinery gene
CV098_RS10890 (CV098_10890)	comGF	2231715..2232161 (-)	447	WP_032948129.1	competence type IV pilus minor pilin ComGF	Machinery gene
CV098_RS10895 (CV098_10895)	comGE	2232124..2232420 (-)	297	WP_017865157.1	competence type IV pilus minor pilin ComGE	Machinery gene
CV098_RS10900 (CV098_10900)	comGD	2232392..2232823 (-)	432	WP_026138965.1	competence type IV pilus minor pilin ComGD	Machinery gene
CV098_RS10905 (CV098_10905)	comGC	2232783..2233118 (-)	336	WP_032948139.1	competence type IV pilus major pilin ComGC	Machinery gene
CV098_RS10910 (CV098_10910)	comGB	2233180..2234253 (-)	1074	WP_080613278.1	competence type IV pilus assembly protein ComGB	Machinery gene
CV098_RS10915 (CV098_10915)	comGA	2234147..2235085 (-)	939	WP_026138968.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

• Length: 111 a.a.
• Molecular weight: 12809.85 Da
• Isoelectric Point: 4.9166

>NTDB_id=256831 CV098_RS10905 WP_032948139.1 2232783..2233118(-) (comGC) [Lactococcus lactis subsp. lactis strain G423]
MFVKICEKKCRQKELRAFTLIEMLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQAQLYELDHDDEKPSLSE
LLSAGMITQKQISAYDNYYDQNKNEERNFND

Nucleotide

• Length: 336 bp

>NTDB_id=256831 CV098_RS10905 WP_032948139.1 2232783..2233118(-) (comGC) [Lactococcus lactis subsp. lactis strain G423]
ATGTTCGTTAAAATTTGTGAAAAAAAATGCCGTCAGAAAGAGCTAAGAGCTTTTACTTTGATAGAGATGTTAATTGTACT
AGCTATTATTAGTATTTTGATATTACTATTTGTTCCAAATTTAATTAAAGAAAAATCACAAGTTCAAAAAACTGGAGAAG
CGGCAGTTGTAAAAGTAGTAGAAAGTCAAGCTCAACTTTATGAATTAGATCATGATGATGAGAAGCCGAGTCTGTCAGAA
TTGCTCAGCGCTGGGATGATTACTCAAAAACAAATTTCTGCTTACGATAATTACTATGATCAGAATAAAAATGAAGAACG
AAATTTTAATGACTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (16-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Lactococcus lactis subsp. cremoris KW2	83.636	99.099	0.829
comYC	Streptococcus mutans UA159	56.436	90.991	0.514
comYC	Streptococcus mutans UA140	56.436	90.991	0.514
comGC/cglC	Streptococcus mitis SK321	55.446	90.991	0.505
comYC	Streptococcus gordonii str. Challis substr. CH1	55.556	89.189	0.495
comGC/cglC	Streptococcus pneumoniae TIGR4	53.465	90.991	0.486
comGC/cglC	Streptococcus pneumoniae Rx1	53.465	90.991	0.486
comGC/cglC	Streptococcus pneumoniae D39	53.465	90.991	0.486
comGC/cglC	Streptococcus pneumoniae R6	53.465	90.991	0.486
comGC/cglC	Streptococcus mitis NCTC 12261	57.303	80.18	0.459
comYC	Streptococcus suis isolate S10	55.682	79.279	0.441