Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   CV098_RS10885 Genome accession   NZ_CP024958
Coordinates   2231392..2231676 (-) Length   94 a.a.
NCBI ID   WP_017865155.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G423     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2226392..2236676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV098_RS10850 (CV098_10850) rpmG 2226671..2226820 (-) 150 WP_010906305.1 50S ribosomal protein L33 -
  CV098_RS10855 (CV098_10855) - 2226861..2227976 (-) 1116 Protein_2115 acyltransferase family protein -
  CV098_RS10860 (CV098_10860) - 2227987..2228280 (+) 294 WP_226898169.1 pseudouridine synthase -
  CV098_RS10865 (CV098_10865) - 2228319..2229128 (-) 810 WP_014570791.1 metal ABC transporter permease -
  CV098_RS10870 (CV098_10870) - 2229121..2229858 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  CV098_RS10875 (CV098_10875) - 2230035..2230877 (-) 843 WP_017865154.1 metal ABC transporter substrate-binding protein -
  CV098_RS10880 (CV098_10880) - 2230874..2231311 (-) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  CV098_RS10885 (CV098_10885) comGG 2231392..2231676 (-) 285 WP_017865155.1 competence type IV pilus minor pilin ComGG Machinery gene
  CV098_RS10890 (CV098_10890) comGF 2231715..2232161 (-) 447 WP_032948129.1 competence type IV pilus minor pilin ComGF Machinery gene
  CV098_RS10895 (CV098_10895) comGE 2232124..2232420 (-) 297 WP_017865157.1 competence type IV pilus minor pilin ComGE Machinery gene
  CV098_RS10900 (CV098_10900) comGD 2232392..2232823 (-) 432 WP_026138965.1 competence type IV pilus minor pilin ComGD Machinery gene
  CV098_RS10905 (CV098_10905) comGC 2232783..2233118 (-) 336 WP_032948139.1 competence type IV pilus major pilin ComGC Machinery gene
  CV098_RS10910 (CV098_10910) comGB 2233180..2234253 (-) 1074 WP_080613278.1 competence type IV pilus assembly protein ComGB Machinery gene
  CV098_RS10915 (CV098_10915) comGA 2234147..2235085 (-) 939 WP_026138968.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10782.04 Da        Isoelectric Point: 5.5720

>NTDB_id=256827 CV098_RS10885 WP_017865155.1 2231392..2231676(-) (comGG) [Lactococcus lactis subsp. lactis strain G423]
MFSMFLQFYLQRQIDDARQLRSEKEQLTAELMVSVALKTDLKSQGQIHFDSGDLSYNLLTDSSASSKITDHSSDEKTYQF
SIHLKDGANFQIKN

Nucleotide


Download         Length: 285 bp        

>NTDB_id=256827 CV098_RS10885 WP_017865155.1 2231392..2231676(-) (comGG) [Lactococcus lactis subsp. lactis strain G423]
ATGTTTTCAATGTTTCTTCAGTTCTATTTGCAAAGGCAAATAGATGATGCTCGACAATTAAGAAGTGAAAAGGAGCAGTT
AACAGCTGAATTAATGGTGTCAGTAGCTTTAAAGACTGATTTAAAATCTCAAGGTCAAATTCATTTTGATTCAGGAGATT
TGTCCTACAATTTACTGACAGATTCGTCAGCCAGTTCAAAAATTACTGACCATTCAAGTGATGAAAAAACTTATCAATTT
AGTATCCATCTAAAAGATGGCGCAAACTTTCAAATAAAAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Lactococcus lactis subsp. cremoris KW2

60.215

98.936

0.596

Multiple sequence alignment