Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CS557_RS13830 Genome accession   NZ_CP024632
Coordinates   2941522..2942751 (+) Length   409 a.a.
NCBI ID   WP_099949292.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2936522..2947751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS13795 (CS557_13800) rimP 2937147..2937671 (-) 525 WP_004916844.1 ribosome maturation factor RimP -
  CS557_RS13815 (CS557_13820) secG 2938294..2938623 (-) 330 WP_004916847.1 preprotein translocase subunit SecG -
  CS557_RS13820 (CS557_13825) tpiA 2938636..2939427 (-) 792 WP_099949290.1 triose-phosphate isomerase -
  CS557_RS13825 (CS557_13830) pilB 2939773..2941497 (+) 1725 WP_099949291.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CS557_RS13830 (CS557_13835) pilC 2941522..2942751 (+) 1230 WP_099949292.1 type II secretion system F family protein Machinery gene
  CS557_RS13835 (CS557_13840) pilD 2942764..2943624 (+) 861 WP_099949293.1 prepilin peptidase Machinery gene
  CS557_RS13840 (CS557_13845) coaE 2943626..2944225 (+) 600 WP_004957489.1 dephospho-CoA kinase -
  CS557_RS13845 (CS557_13850) - 2944222..2945133 (-) 912 WP_099949294.1 DMT family transporter -
  CS557_RS13850 (CS557_13855) rlmB 2945164..2945913 (-) 750 WP_099949295.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CS557_RS13855 (CS557_13860) - 2946042..2946368 (-) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44978.41 Da        Isoelectric Point: 9.8960

>NTDB_id=254600 CS557_RS13830 WP_099949292.1 2941522..2942751(+) (pilC) [Acinetobacter junii strain lzh-X15]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKSEVEGGNTFAGALKKYPQYFDTLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFILIIVVGAIIA
AFLEAKKRSKKFRDGLDKLALRLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVA
TGQQLQFAMRVSNRFPAMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=254600 CS557_RS13830 WP_099949292.1 2941522..2942751(+) (pilC) [Acinetobacter junii strain lzh-X15]
ATGGCAGCGAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAATATGGCTTTAGCGAAAGTCACCTTACGTAAACAAGGCGTGACGATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTAACGACCTTGGATATCACGGTTTTCACACGCCAATTAGCAACA
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTTGCAGAAGGCTTGGAAAATCCATCCATGCGTGAGGT
CGTACTAGGATTAAAAAGTGAAGTTGAAGGCGGTAATACTTTCGCTGGTGCTTTAAAAAAATATCCTCAATACTTCGATA
CCTTATTTTGTTCACTCGTCGAATCAGGGGAGCAATCTGGTGCACTTGAGACTATGCTAGATCGTGTCGCTATCTACAAA
GAAAAAAGTGAGCTACTCAAACAAAAAATTAAAAAAGCAATGAAATATCCGATTACGGTGATTGTAGTTGCTGTGATCGT
TACAATTATTTTGATGGTTAAAGTAGTCCCTGTATTCCAAGACCTATTTAGTTCATTTGGTGCAGACTTACCTGCTTTTA
CCCAAATGGTTGTCAATATGTCTAAATGGATGCAAGAGTATTGGTTCATTCTGATTATTGTTGTTGGTGCGATTATTGCT
GCATTCCTAGAAGCTAAAAAACGTAGTAAAAAATTTAGAGATGGCTTAGATAAACTTGCTTTAAGACTGCCAATCTTTGG
TGATCTCGTATACAAAGCAATTATTGCTCGCTATAGTCGCACACTAGCAACGACATTTGCAGCGGGCGTTCCTTTAATCG
ATGCGCTTACATCCACAGCAGGCGCAACCAATAATGTTGTTTATGAAGAAGCCGTACTTAAGATTAGAGAAGATGTTGCA
ACGGGGCAGCAACTGCAATTTGCTATGCGTGTTTCAAACCGCTTCCCTGCGATGGCAATTCAAATGGTCGCAATTGGTGA
AGAGTCTGGTGCACTTGATTCTATGTTGGATAAAGTTGCAACACACTACGAAAATGAAGTTGACAATGCAGTTGATGGTC
TGACTTCGATGATGGAACCACTTATTATGGCCATACTTGGCGTATTAGTTGGTGGTTTAGTAATCGCCATGTACCTTCCA
ATCTTCCAAATGGGTTCCGTTGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.157

99.756

0.919
  pilC Acinetobacter baylyi ADP1

86.275

99.756

0.861
  pilC Pseudomonas stutzeri DSM 10701

60.591

99.267

0.601
  pilC Legionella pneumophila strain ERS1305867

53.333

99.022

0.528
  pilG Neisseria gonorrhoeae MS11

46.734

97.311

0.455
  pilG Neisseria meningitidis 44/76-A

46.734

97.311

0.455
  pilC Vibrio cholerae strain A1552

41.667

99.756

0.416
  pilC Vibrio campbellii strain DS40M4

40.488

100

0.406
  pilC Thermus thermophilus HB27

37.406

98.044

0.367

Multiple sequence alignment