Detailed information NTG0254601

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CS557_RS13835
• Genome accession: NZ_CP024632
• Coordinates: 2942764..2943624 (+)
• Length: 286 a.a.
• NCBI ID: WP_099949293.1
• Uniprot ID: -
• Organism: Acinetobacter junii strain lzh-X15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2937764..2948624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CS557_RS13815 (CS557_13820)	secG	2938294..2938623 (-)	330	WP_004916847.1	preprotein translocase subunit SecG	-
CS557_RS13820 (CS557_13825)	tpiA	2938636..2939427 (-)	792	WP_099949290.1	triose-phosphate isomerase	-
CS557_RS13825 (CS557_13830)	pilB	2939773..2941497 (+)	1725	WP_099949291.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CS557_RS13830 (CS557_13835)	pilC	2941522..2942751 (+)	1230	WP_099949292.1	type II secretion system F family protein	Machinery gene
CS557_RS13835 (CS557_13840)	pilD	2942764..2943624 (+)	861	WP_099949293.1	prepilin peptidase	Machinery gene
CS557_RS13840 (CS557_13845)	coaE	2943626..2944225 (+)	600	WP_004957489.1	dephospho-CoA kinase	-
CS557_RS13845 (CS557_13850)	-	2944222..2945133 (-)	912	WP_099949294.1	DMT family transporter	-
CS557_RS13850 (CS557_13855)	rlmB	2945164..2945913 (-)	750	WP_099949295.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
CS557_RS13855 (CS557_13860)	-	2946042..2946368 (-)	327	WP_004958605.1	pyrimidine/purine nucleoside phosphorylase	-
CS557_RS13860 (CS557_13865)	recN	2946893..2948554 (+)	1662	WP_099949296.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31937.62 Da
• Isoelectric Point: 7.8116

>NTDB_id=254601 CS557_RS13835 WP_099949293.1 2942764..2943624(+) (pilD) [Acinetobacter junii strain lzh-X15]
MLSLLTYFIENPTALYIAVGLISLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHPEQPIIDQSKLTLSQPVSTCPKCQTP
IKWFQNIPLISWLALRGKCGTCKNPISIRYPLIELLTMICSLIVVAVFGATIQMLFGLILTWTLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFAIYTTPSAAIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSM
VGAIIGIMLMKMRGENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=254601 CS557_RS13835 WP_099949293.1 2942764..2943624(+) (pilD) [Acinetobacter junii strain lzh-X15]
ATGCTTTCTTTACTTACTTATTTTATTGAAAATCCAACTGCACTTTATATTGCAGTTGGATTAATCAGCCTGTGCATCGG
TAGTTTTTTAAATGTTGTGATCTTTCGCACTCCAAAAATGATGGAGCAAGAATGGCATCAAGAATGCCAAATGCTTTTAC
ACCCTGAACAACCGATCATAGATCAGAGCAAGTTAACATTAAGTCAGCCAGTTTCTACCTGCCCTAAGTGTCAAACGCCA
ATTAAATGGTTCCAAAACATCCCCCTTATTAGTTGGTTAGCGCTACGCGGTAAATGTGGCACTTGCAAAAATCCAATTAG
CATTCGTTACCCGTTGATTGAACTACTTACTATGATCTGTTCATTGATCGTTGTAGCAGTATTCGGTGCAACAATTCAGA
TGCTGTTCGGCTTAATTCTAACGTGGACACTGATTGCACTCACTTTTATTGATTTTGATACACAATTACTACCTGATCGA
TTTACGCTACCTTTAGCAGCATTAGGTCTAGGTATTAATACTTTTGCAATCTATACAACGCCTAGTGCTGCGATCTGGGG
CTATTTAATAGGTTTTCTATGTCTTTGGATTGTCTATTACCTATTTAAAATCATCACGGGCAAAGAAGGTATGGGCTATG
GTGATTTTAAATTGCTTGCAGCCCTTGGTGCATGGATGGGTCCGATGATGTTACCCCTCATCGTATTACTCTCTTCTATG
GTAGGTGCAATTATTGGTATTATGCTGATGAAAATGCGCGGTGAAAATCAACCTTTTGCATTTGGCCCTTATATTGCAAT
TGCTGGTTGGATTGCCTTTCTATGGGGTGAGCAAATTATGAAAGTATATCTTGGGGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	82.168	100	0.822
pilD	Acinetobacter baumannii D1279779	81.818	100	0.818
pilD	Vibrio cholerae strain A1552	54.851	93.706	0.514
pilD	Vibrio campbellii strain DS40M4	50.936	93.357	0.476
pilD	Neisseria gonorrhoeae MS11	45.055	95.455	0.43