Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CS557_RS01565 Genome accession   NZ_CP024632
Coordinates   331944..334076 (+) Length   710 a.a.
NCBI ID   WP_412778900.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 326944..339076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS01545 (CS557_01550) pilM 328916..329974 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  CS557_RS01550 (CS557_01555) pilN 329974..330618 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  CS557_RS01555 (CS557_01560) pilO 330615..331355 (+) 741 WP_099947981.1 type 4a pilus biogenesis protein PilO Machinery gene
  CS557_RS01560 (CS557_01565) pilP 331355..331882 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  CS557_RS01565 (CS557_01570) pilQ 331944..334076 (+) 2133 WP_412778900.1 type IV pilus secretin PilQ Machinery gene
  CS557_RS01570 (CS557_01575) aroK 334096..334656 (+) 561 WP_004909618.1 shikimate kinase AroK -
  CS557_RS01575 (CS557_01580) aroB 334677..335759 (+) 1083 WP_099947983.1 3-dehydroquinate synthase -
  CS557_RS01580 (CS557_01585) - 335776..336654 (+) 879 WP_099947984.1 hypothetical protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77207.59 Da        Isoelectric Point: 5.5245

>NTDB_id=254578 CS557_RS01565 WP_412778900.1 331944..334076(+) (pilQ) [Acinetobacter junii strain lzh-X15]
MNHAFRQFSMAAVAIAISQVASAQVGITNIVPMNLGDQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKTQQNLKQTSI
PVSTNEASSINVAADDQRARLIVNLKDSGAFTTRVEGNTFVLKINSAKPPLISNPTVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGGNTPVDVQQQGSKIVVRTLGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPNKAKPQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVTELIKAEEDEAKAIAQSIKLAPIQSEYIQLSYAKATDILKLIEESRDGKGAVSNRTANSDSLALE
SLLSPRGSAVADTRTNTLIVNDTAQNIDKVRKMIDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGLLSQGISSNNDLLV
GGSDTTLWNLRDPEKDENTGGWKYEIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVL
TADKQAAKIESGTQIPYSSSTGGGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLNITKDSPGTPTPTGQLTINKNTID
TNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=254578 CS557_RS01565 WP_412778900.1 331944..334076(+) (pilQ) [Acinetobacter junii strain lzh-X15]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGGTTGCAATTGCTATTTCGCAAGTAGCTTCGGCACAGGTGGGTAT
TACAAATATTGTGCCGATGAACTTGGGTGATCAGGGTACTGAAATCAGAGTCATGTTTAATGGTTTGCCTCCTCAACCAC
AGGCCTATCAACTTGAGCAGCCTGCTCGTTTAATTTTAGATTTTGATAAGACTCAGCAGAACTTAAAGCAAACGTCTATT
CCTGTTTCAACCAATGAGGCAAGTTCAATTAATGTGGCAGCAGATGATCAGCGTGCGCGTTTGATTGTGAATTTAAAAGA
CTCGGGTGCTTTCACAACCCGTGTTGAAGGTAATACTTTTGTTTTAAAAATAAATTCTGCAAAACCACCATTAATCAGTA
ATCCTACGGTTGCTACTCGACAAGTTCAACAAGGTGTTTCCAATATTGGTTTTCAAAGAGGAAATCAAGGTGAAGGGCTA
GTTGTTATTGATTTGTTGGGAGGTAATACACCGGTAGATGTACAACAACAGGGGAGTAAAATTGTTGTTCGTACGCTTGG
AAATAAAATTCCAACACACTTAGCGCGTCGTTTAAACACTAATGATTTTGCGACCCCAGTAGCAAGTATTGATGCTTATA
ATGATAAAGGAAATGGGGTTATTACTATTCAATCTGCGGGTAGTTATGAGTACATGGCTTATCAGGCAGAAAACAAACTT
ACAATTAGTTTAAAAAGACCAGAAGATAAATCACCGAATAAAGCTAAGCCACAAACCTATACTGGAAATAAGATTTCATT
GGATTTCCAAGACATCGAGGTTCGCCGTGTTTTGCAATTATTAGCAGACTTTACGGGAATCAACATGGTTGCTGCTGATA
CTGTACAAGGAAATATTACACTACGTCTTAAAGATGTTCCTTGGGATCAGGCTCTTGATATCGTTTTAAAAACAAAAAAT
TTGGATAAACGTCGTAATGGAAATGTAATTTGGATTGCACCAGTTACGGAGTTGATCAAAGCGGAAGAGGATGAGGCGAA
AGCAATTGCTCAAAGTATAAAGTTAGCGCCTATTCAATCAGAATATATTCAACTGAGCTACGCTAAAGCGACAGATATAT
TAAAATTGATTGAAGAATCTCGAGATGGTAAAGGTGCGGTCTCAAATCGTACAGCTAATTCTGACTCACTTGCTTTGGAG
AGTTTATTAAGCCCTCGCGGTAGTGCAGTTGCGGATACACGAACAAATACGCTAATTGTAAATGATACAGCCCAAAACAT
AGATAAAGTCCGTAAGATGATTGACTTGCTCGATGTATCGGTGAAGCAAGTGATGATTGAGGCACGTATTGTGCGTGCGA
GTACTGACTTTACTAAAGAAATGGGAGTTAAATGGGGGTTATTGTCTCAAGGTATATCTTCAAACAATGATCTTTTAGTT
GGTGGTAGTGATACAACTTTATGGAATCTCCGTGATCCAGAAAAAGATGAAAATACTGGGGGGTGGAAATATGAGATTGA
ACGCCCTGATAACTTGAATGTAAACCTAGGTGCTGTAACCCCTGGAGCAAGTCGTATTGCTTTTGGTTTAATTAGTCTTT
CAGATTTTATGTTGGACCTAGAGTTGTCGGCTGTTCAGGCTGATGGTTATGGTGAGGTAATCTCAACTCCGAAAGTTCTA
ACCGCAGATAAGCAAGCTGCAAAAATTGAATCAGGAACTCAAATTCCTTATTCATCTTCTACGGGTGGTGGAGCTAATGC
TGTTCCAAAAACTGAATTTATTGATGCGACCTTAAGTTTGGATGTTACACCGAGTATCACTCCTGAAGGTAAGGTGATGA
TGAAATTAAACATCACCAAGGACTCACCAGGAACACCAACACCTACAGGACAGTTGACGATTAATAAAAATACGATTGAT
ACCAATGTTGTGGTTGATAATGGTGAAACTGTTGTTCTTGGTGGAATTTTTGAGCAAGAAAATATTAATTCTCAGACCAA
AGTTCCATTCTTGGGTGATTTGCCTTATGTTGGGAAATTATTCCGTAGAGAGTCTAAACAAGACAATAAACGCGAGTTGC
TTATTTTTGTTACGCCGAGAATTGTTAATGACACTTTGACAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(292-334)

AMIN domain (AMIN)

(37-122)

Bacterial type II and III secretion system protein (Secretin)

(544-702)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.343

100

0.748
  pilQ Acinetobacter baumannii strain A118

73.343

100

0.748
  comQ Acinetobacter baylyi ADP1

70.18

100

0.713
  pilQ Pseudomonas aeruginosa PAK

40.89

98.169

0.401
  pilQ Legionella pneumophila strain ERS1305867

39.318

94.93

0.373
  pilQ Legionella pneumophila strain Lp02

39.137

94.648

0.37
  pilQ Neisseria gonorrhoeae strain FA1090

34.959

100

0.363

Multiple sequence alignment