Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   CS557_RS01555 Genome accession   NZ_CP024632
Coordinates   330615..331355 (+) Length   246 a.a.
NCBI ID   WP_099947981.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 325615..336355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS01540 (CS557_01545) ponA 326174..328753 (-) 2580 WP_099947980.1 penicillin-binding protein PBP1a -
  CS557_RS01545 (CS557_01550) pilM 328916..329974 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  CS557_RS01550 (CS557_01555) pilN 329974..330618 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  CS557_RS01555 (CS557_01560) pilO 330615..331355 (+) 741 WP_099947981.1 type 4a pilus biogenesis protein PilO Machinery gene
  CS557_RS01560 (CS557_01565) pilP 331355..331882 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  CS557_RS01565 (CS557_01570) pilQ 331944..334076 (+) 2133 WP_412778900.1 type IV pilus secretin PilQ Machinery gene
  CS557_RS01570 (CS557_01575) aroK 334096..334656 (+) 561 WP_004909618.1 shikimate kinase AroK -
  CS557_RS01575 (CS557_01580) aroB 334677..335759 (+) 1083 WP_099947983.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27776.35 Da        Isoelectric Point: 4.6374

>NTDB_id=254576 CS557_RS01555 WP_099947981.1 330615..331355(+) (pilO) [Acinetobacter junii strain lzh-X15]
MSQEELNELNQDVAVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKVTCWIFVFLAVLALGYFVVIKSQLERIANEEAKEQ
SLLNEFREKDSKLRNLQRYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPI
SIEATGDYHAFGAFATGIAALPRIVTLHDFTVEASEDKTKKSDIPVVNYSVKAKTYRYVGADDAANTEVGAAVPPQSNPP
SQGGTN

Nucleotide


Download         Length: 741 bp        

>NTDB_id=254576 CS557_RS01555 WP_099947981.1 330615..331355(+) (pilO) [Acinetobacter junii strain lzh-X15]
ATGAGTCAAGAAGAATTAAATGAACTCAATCAAGATGTTGCTGTAAAGAAAAAGAAAATGACAGTAGAGCAATTCTTTCA
GCAATTTAATACGCTTGATATGAATAATTACGGTAGCTGGCCGCTATCTGTAAAAGTGACATGTTGGATTTTTGTTTTTT
TAGCTGTTTTAGCACTTGGTTACTTTGTTGTTATTAAATCTCAGCTTGAGCGCATTGCTAATGAAGAGGCTAAAGAGCAA
AGTTTATTGAATGAATTTAGAGAAAAAGACTCTAAATTGCGTAATTTGCAGCGTTACCAAGCTCAGTTACAAGAAATGGA
AGCTAATTTTAATCAGCAACTAGAACAATTGCCGAAAGAAACTGAGATTCCAAGTTTGGTTGAAGATATTAACTTGACTG
GTGTAAATTCGGGGTTGAAGTTTAAGAATATTCGCCTAGAAAATGAGGTTAAGCAAGAATTCTTTATTGAACAACCGATT
AGTATTGAAGCAACTGGCGATTATCATGCATTTGGAGCATTTGCTACAGGTATTGCTGCATTGCCTCGAATTGTAACTTT
ACATGATTTCACGGTTGAAGCATCCGAAGATAAGACGAAGAAGTCAGATATTCCTGTTGTGAATTATTCTGTTAAAGCTA
AAACCTACCGTTATGTAGGGGCTGATGATGCAGCAAATACTGAGGTTGGAGCGGCGGTACCTCCTCAGAGTAATCCACCT
AGTCAAGGAGGAACTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.47

100

0.728
  comO Acinetobacter baylyi ADP1

73.043

93.496

0.683

Multiple sequence alignment