Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CTZ23_RS01475 Genome accession   NZ_CP024620
Coordinates   302051..304189 (+) Length   712 a.a.
NCBI ID   WP_171456166.1    Uniprot ID   -
Organism   Acinetobacter indicus strain SGAir0564     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297051..309189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTZ23_RS01455 (CTZ23_01450) pilM 299054..300112 (+) 1059 WP_045795257.1 pilus assembly protein PilM Machinery gene
  CTZ23_RS01460 (CTZ23_01455) pilN 300112..300747 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  CTZ23_RS01465 (CTZ23_01460) pilO 300744..301463 (+) 720 WP_104988082.1 type 4a pilus biogenesis protein PilO Machinery gene
  CTZ23_RS01470 (CTZ23_01465) pilP 301463..301990 (+) 528 WP_035363443.1 pilus assembly protein PilP Machinery gene
  CTZ23_RS01475 (CTZ23_01470) pilQ 302051..304189 (+) 2139 WP_171456166.1 type IV pilus secretin PilQ Machinery gene
  CTZ23_RS01480 (CTZ23_01475) aroK 304226..304768 (+) 543 WP_016658449.1 shikimate kinase AroK -
  CTZ23_RS01485 (CTZ23_01480) aroB 304791..305873 (+) 1083 WP_045795260.1 3-dehydroquinate synthase -
  CTZ23_RS01490 (CTZ23_01485) - 305886..306722 (+) 837 WP_104988084.1 hypothetical protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76749.87 Da        Isoelectric Point: 5.0549

>NTDB_id=254424 CTZ23_RS01475 WP_171456166.1 302051..304189(+) (pilQ) [Acinetobacter indicus strain SGAir0564]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLVLDFDKAQQSLKQASI
PVATREASSVDVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQAAATPVAVQQTAQGVSNIGFQRGAEGEGQVVI
DLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGVITIQSAGSYEYMAYQAENKLTIS
LKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITDGKNASNSRGGTNSGSGADPLGDS
VGSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRGMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNHL
LVGGSDTTLWNLREPELDEERGGYTYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPK
VLTADKQQAKVASGTQIPYQSAEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMNLNITSDSPGAPTPTGQLTINKNS
INTNVLVDNGETVVLGGIFEQQTANQQTKVPFLGDIPYLGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=254424 CTZ23_RS01475 WP_171456166.1 302051..304189(+) (pilQ) [Acinetobacter indicus strain SGAir0564]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCTGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCAT
TACCAATATCGTACCCATGCAAATTCCAGGACAAGGTACTGAAATTCGTGTCATGTTCAATGGCTTGCCACCTCAGCCTG
CAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTGCTGGATTTTGATAAAGCCCAGCAGAGCTTAAAACAGGCCAGCATT
CCGGTTGCGACCCGAGAAGCCAGCTCGGTTGATGTCAGTTCCGATGCCCAGCGTGCACGTTTAACGGTCAATCTGGCTGA
AGCCGGTGCTTTTACTACCCGTGTCGAAGGCAATACTTTTATTCTTAAAATTAATAGCACTCAGGCAGCCGCAACCCCAG
TAGCCGTACAGCAGACGGCTCAAGGCGTATCGAATATTGGCTTCCAGCGCGGTGCAGAAGGGGAAGGTCAGGTGGTGATT
GACCTGGCAGGCAGCAATACTCCGGTCGATGTACAACAGCAAGGCAGTAAAATTATTGTCCGTACTTTGGGCAATAAAAT
TCCTGCACATCTGGCGCGCCGGTTAAATGTCAATGATTTTGCCACGCCGGTATCTACCATTGATGCGCAAAATGATGGTG
GTAATGGGGTAATTACCATTCAGTCGGCGGGAAGCTATGAATACATGGCGTATCAGGCGGAAAATAAACTGACCATTAGC
CTGAAACGCCCGGTAGATAAGAACCCGTTTAAACCGCGTGCAGCACAAAGCTATACCGGCAAAAAGATTTCTTTAGATTT
CCAGGATATTGAAGTGCGTCGTGTGCTGCAGTTACTGGCGGATTTTACCGGGATTAACATGGTTGCCGCCGATACGGTAC
AAGGCAATATCACCTTACGTCTCAAAGATGTGCCGTGGGATCAGGCACTAGATATTATTTTAAAAACTAAAAATCTGGAT
AAACGCCGTAACGGCAATGTGATCTGGATTGCACCCGTCGCAGAGCTGATCAAGGCCGAAGAAGAAGAAGCTAAAGCGAT
TGCACAAAGCGTCAAGCTGGCGCCGCTGCAAACCGAATATATTCAGTTAAATTATGCCAAGGCTGCTGATATTGAGAAAC
TGATTACTGATGGTAAAAACGCATCCAATTCTCGTGGCGGCACAAATTCGGGTTCAGGGGCAGATCCACTTGGTGATAGC
GTCGGTAGTCTGCTCAGCCCTCGCGGTACCGTGTCAGTTGATCCACGAACCAACACCCTGATTATTAATGATACCGCGCA
AAAGATTGACCAGATTCGCGGCATGATTGACTTGCTGGATGTGTCAGTGAAACAGGTGATGATTGAAGCGCGTATTGTGC
GTGCCACCACTGACTTCACCAAAGAGATGGGGGTGAAGTGGGGTATCCTGTCACAGGGTATCACGAATAATAACCATCTT
TTGGTTGGTGGTAGTGATACCACACTGTGGAATTTACGTGAGCCAGAGCTTGATGAAGAGCGTGGTGGTTATACCTATGA
AATTGAACGTCCACAAAACTTGAATGTCGATTTGGGGGTCACCAGCCCAGGTGCGAGCCGGATTGCTTTTGGTCTCATCA
GCCTGTCTGACTTTATGCTGGATTTAGAACTGTCTGCATTACAAGCTGATGGTTATGGTGAAGTGATTTCGACCCCGAAA
GTACTGACTGCTGATAAGCAGCAGGCCAAAGTGGCTTCAGGTACGCAGATTCCGTATCAGTCTGCTGAAGGAGGTGGTGT
CAATGCGGTATCCACCACCGAGTTTATTGATGCAACCTTAAGTCTGGATGTAACGCCAAGTATCACCCCGGATGGTAAAG
TGCAGATGAACCTGAATATCACCAGTGATAGTCCAGGAGCACCAACCCCAACCGGTCAGCTGACGATTAACAAAAACTCG
ATCAATACCAATGTACTGGTCGATAATGGTGAAACCGTCGTGCTCGGTGGTATTTTTGAGCAGCAGACAGCCAATCAGCA
AACCAAAGTGCCATTCCTGGGGGATATTCCGTATTTAGGCCGTTTATTCCGTAAAGATATTAAATCGGACAATAAACGTG
AGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(290-332)

AMIN domain (AMIN)

(40-121)

Bacterial type II and III secretion system protein (Secretin)

(546-704)

Bacterial type II/III secretion system short domain (Secretin_N)

(359-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

77.147

100

0.782
  pilQ Acinetobacter baumannii strain A118

77.008

100

0.781
  comQ Acinetobacter baylyi ADP1

74.23

100

0.744
  pilQ Pseudomonas aeruginosa PAK

40.371

98.455

0.397
  pilQ Legionella pneumophila strain Lp02

38.614

99.298

0.383
  pilQ Legionella pneumophila strain ERS1305867

38.331

99.298

0.381

Multiple sequence alignment