Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   CTZ23_RS01465 Genome accession   NZ_CP024620
Coordinates   300744..301463 (+) Length   239 a.a.
NCBI ID   WP_104988082.1    Uniprot ID   -
Organism   Acinetobacter indicus strain SGAir0564     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 295744..306463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTZ23_RS01450 (CTZ23_01445) ponA 296312..298882 (-) 2571 WP_104988081.1 penicillin-binding protein PBP1a -
  CTZ23_RS01455 (CTZ23_01450) pilM 299054..300112 (+) 1059 WP_045795257.1 pilus assembly protein PilM Machinery gene
  CTZ23_RS01460 (CTZ23_01455) pilN 300112..300747 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  CTZ23_RS01465 (CTZ23_01460) pilO 300744..301463 (+) 720 WP_104988082.1 type 4a pilus biogenesis protein PilO Machinery gene
  CTZ23_RS01470 (CTZ23_01465) pilP 301463..301990 (+) 528 WP_035363443.1 pilus assembly protein PilP Machinery gene
  CTZ23_RS01475 (CTZ23_01470) pilQ 302051..304189 (+) 2139 WP_171456166.1 type IV pilus secretin PilQ Machinery gene
  CTZ23_RS01480 (CTZ23_01475) aroK 304226..304768 (+) 543 WP_016658449.1 shikimate kinase AroK -
  CTZ23_RS01485 (CTZ23_01480) aroB 304791..305873 (+) 1083 WP_045795260.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27076.73 Da        Isoelectric Point: 5.3791

>NTDB_id=254422 CTZ23_RS01465 WP_104988082.1 300744..301463(+) (pilO) [Acinetobacter indicus strain SGAir0564]
MSLDQYEEMNQDPVAAPKKKMTLDKFLQQWNTLDPNNYGSWPFSVKLTIWIFIIILIAILGYFLAIKPKLDAISNARAQE
QNLLNEFREKDSKLRNLQQYQAQLHEMEANFNQQLQQLPKETEIPGLVEDVNVTGVNSGLRFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFTITAGENKEKKTDIPQITYVAKAKTYRYVANTDAQAGNSTTPATGAAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=254422 CTZ23_RS01465 WP_104988082.1 300744..301463(+) (pilO) [Acinetobacter indicus strain SGAir0564]
ATGAGTCTCGATCAATATGAAGAAATGAATCAGGATCCTGTTGCTGCGCCAAAGAAAAAAATGACGCTGGATAAATTCCT
GCAGCAATGGAATACCTTAGATCCGAATAACTATGGCAGCTGGCCGTTTTCCGTCAAGCTGACCATCTGGATCTTTATTA
TTATTTTAATTGCCATCCTGGGCTATTTCCTGGCCATCAAGCCGAAGCTGGATGCAATTTCCAATGCGCGTGCACAAGAG
CAGAACCTGCTGAATGAGTTTCGTGAAAAAGATTCCAAACTGCGTAACTTGCAGCAATATCAGGCGCAGTTACATGAAAT
GGAAGCCAACTTTAACCAGCAGCTACAACAGTTGCCAAAAGAAACCGAAATTCCAGGTCTGGTTGAAGATGTCAACGTTA
CGGGCGTGAATTCAGGCTTAAGATTTAAAAATATCCGTCTGGAAAATGAAATCAAGCAAGAGTTCTTTATCGAGCAGCCA
ATTTCGATTGAAGCCACCGGTGATTATCATGCTTTTGGTTCTTTTGTGAGCGGTACAGCCGCTTTACCGCGAATTGTGAC
CATGCATGATTTCACTATTACTGCCGGTGAAAACAAGGAAAAGAAAACCGATATTCCACAAATTACCTATGTCGCGAAAG
CCAAGACCTATCGCTATGTCGCGAATACCGATGCACAGGCCGGTAATAGTACGACTCCAGCCACAGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

68.908

99.582

0.686
  comO Acinetobacter baylyi ADP1

66.803

100

0.682

Multiple sequence alignment