Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CG478_RS16355 Genome accession   NZ_CP024111
Coordinates   3115124..3116863 (-) Length   579 a.a.
NCBI ID   WP_012095327.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain CH_4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3110124..3121863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG478_RS16325 (CG478_016300) - 3110942..3111175 (+) 234 WP_012095322.1 DUF2627 domain-containing protein -
  CG478_RS16330 (CG478_016305) - 3111272..3112000 (-) 729 WP_012095323.1 glycerophosphodiester phosphodiesterase -
  CG478_RS16335 (CG478_016310) - 3112050..3112196 (+) 147 WP_012095324.1 YycC family protein -
  CG478_RS16340 (CG478_016315) spo0A 3112626..3113420 (-) 795 WP_012095325.1 sporulation transcription factor Spo0A Regulator
  CG478_RS16350 (CG478_016320) spoIVB 3113706..3115004 (-) 1299 WP_012095326.1 SpoIVB peptidase -
  CG478_RS16355 (CG478_016325) recN 3115124..3116863 (-) 1740 WP_012095327.1 DNA repair protein RecN Machinery gene
  CG478_RS16360 (CG478_016330) argR 3117111..3117560 (-) 450 WP_012095328.1 arginine repressor ArgR -
  CG478_RS16365 (CG478_016335) - 3117703..3118542 (-) 840 WP_012095329.1 TlyA family RNA methyltransferase -
  CG478_RS16370 (CG478_016340) dxs 3118546..3120438 (-) 1893 WP_012095330.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CG478_RS16375 (CG478_016345) - 3120723..3121574 (-) 852 WP_087095437.1 polyprenyl synthetase family protein -
  CG478_RS16380 (CG478_016350) xseB 3121616..3121846 (-) 231 WP_012095332.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65964.27 Da        Isoelectric Point: 4.8353

>NTDB_id=252117 CG478_RS16355 WP_012095327.1 3115124..3116863(-) (recN) [Bacillus cytotoxicus strain CH_4]
MLSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYIEDDKHPCIAK
AEELDIEIEDGMMILKRDIAANGKSVCRINGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGNRIVKQL
EKYQEVYVKYEQLKKQLKALTENEQQMAHRLDLIQFQYEEIRKADLKVDEEEELTEERLKISNFEKIYKALGDAYRSLTA
DGQGLDHVRNAMGQMESIAHLDESYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIEKAKKELKELESVILKEATMLSDMRYELAERLTSAIHQELKELYMEKTKFEVRIT
KKEGNIEDPLVEGIPVKLTVDGYDQVEFYISTNPGEPLKQLSKVASGGELSRIILALKSIFSKHHGVTSVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTMTSVTILSPEDKVTEIARMISGVEITDLTTEH
AKELLTQANHFKQAAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=252117 CG478_RS16355 WP_012095327.1 3115124..3116863(-) (recN) [Bacillus cytotoxicus strain CH_4]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGTCATTAAATATTTCTTTTCAAAAAGGCTTAACTGTATT
AAGTGGTGAAACAGGAGCTGGAAAATCAATTATTATTGATGCAATTAGCTTGCTTGTTGGTGGTCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAGAAAGCAGAAATTGAAGGATTGTTTTATATAGAGGACGATAAGCACCCGTGCATTGCGAAG
GCAGAAGAGCTGGATATTGAAATTGAAGATGGCATGATGATTTTAAAACGCGACATAGCTGCGAATGGAAAAAGTGTATG
TCGCATAAATGGTAAACTTGTTACATTAAGCATATTGAAAGAAATTGGGAAAACACTTGTTGATATTCACGGACAACATG
AGACACAAGATTTAATGAATGAAGAACGGCATCTCTTTATGCTGGATCATTTCGATGGAAATCGAATTGTAAAACAATTA
GAAAAATATCAAGAAGTATATGTAAAGTATGAACAATTGAAGAAACAATTAAAAGCTTTAACAGAAAATGAACAACAGAT
GGCTCACCGATTGGATTTAATTCAATTCCAATATGAAGAAATTCGTAAAGCGGATTTAAAGGTAGATGAAGAAGAGGAAT
TAACAGAGGAGCGCTTGAAAATCTCTAATTTTGAGAAGATTTATAAAGCGTTAGGTGATGCTTATCGTTCATTAACTGCA
GATGGACAAGGCCTTGATCATGTGCGAAATGCAATGGGGCAAATGGAGAGTATTGCACATTTAGATGAATCGTATCAAGA
AAATCATGATTCAATAGCGAATAGCTATTATTTGCTGGAAGAAGTAGCCTATCAGCTAAGAGAAAAATTAGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATTGAAACTCGTTTAAATGAAATTCGTATGCTAAAGAGAAAGTATGGCAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATAGAGCAAGAAATATTTACGATTGAAAATAAAGATGTGCATATTGAAAA
GGCTAAAAAAGAGTTAAAAGAATTGGAAAGTGTAATCTTAAAAGAAGCGACAATGTTAAGTGATATGCGTTATGAACTTG
CAGAGCGCTTAACAAGTGCTATTCACCAAGAATTGAAAGAACTATATATGGAAAAAACAAAATTTGAAGTGAGAATAACA
AAAAAAGAAGGAAATATAGAAGATCCACTCGTTGAAGGAATACCTGTCAAATTAACAGTGGATGGATATGACCAAGTGGA
GTTCTATATTTCCACAAATCCAGGTGAACCGTTGAAACAACTTTCAAAAGTTGCTTCTGGAGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAGAGTATTTTTTCGAAACATCATGGTGTCACATCTGTCATTTTTGATGAAGTGGATACAGGTGTGAGC
GGCCGAGTTGCACAAGCGATTGCTGAAAAAATTTACAGGGTATCAGTAAATTCACAAGTACTTTGCATTACTCATTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATCCGAAAGCAAGTGGCGAATGATCGGACAATGACATCTGTCACAA
TACTAAGTCCAGAAGATAAAGTGACAGAAATTGCTCGTATGATTTCTGGTGTAGAAATTACGGATTTAACTACGGAACAT
GCGAAAGAGTTACTTACGCAAGCAAATCATTTTAAGCAAGCAGCAGAAGCTATCCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.756

99.136

0.592

Multiple sequence alignment