Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   DEH83_RS05605 Genome accession   NZ_CP029207
Coordinates   1092551..1092877 (+) Length   108 a.a.
NCBI ID   WP_003070783.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1087551..1097877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS05570 (DEH83_05555) - 1088842..1089207 (+) 366 WP_255776366.1 DUF1033 family protein -
  DEH83_RS05575 (DEH83_05560) comGA 1089277..1090218 (+) 942 WP_219123646.1 competence type IV pilus ATPase ComGA Machinery gene
  DEH83_RS05580 (DEH83_05565) comGB 1090160..1091182 (+) 1023 WP_255777234.1 competence type IV pilus assembly protein ComGB Machinery gene
  DEH83_RS05585 (DEH83_05570) comGC 1091179..1091496 (+) 318 WP_006269985.1 competence type IV pilus major pilin ComGC Machinery gene
  DEH83_RS05590 (DEH83_05575) comGD 1091456..1091884 (+) 429 WP_255776367.1 competence type IV pilus minor pilin ComGD Machinery gene
  DEH83_RS05595 (DEH83_05580) comGE/cglE 1091856..1092149 (+) 294 WP_006269989.1 competence type IV pilus minor pilin ComGE Machinery gene
  DEH83_RS05600 (DEH83_05585) comGF/cglF 1092133..1092570 (+) 438 WP_049476068.1 competence type IV pilus minor pilin ComGF Machinery gene
  DEH83_RS05605 (DEH83_05590) comGG/cglG 1092551..1092877 (+) 327 WP_003070783.1 competence type IV pilus minor pilin ComGG Machinery gene
  DEH83_RS05610 (DEH83_05595) comGH 1092962..1093915 (+) 954 WP_255776368.1 class I SAM-dependent methyltransferase Machinery gene
  DEH83_RS05615 (DEH83_05600) - 1093962..1095161 (+) 1200 WP_255776369.1 acetate kinase -
  DEH83_RS05620 (DEH83_05605) glmS 1095552..1097366 (+) 1815 WP_255776370.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12935.74 Da        Isoelectric Point: 10.0181

>NTDB_id=252123 DEH83_RS05605 WP_003070783.1 1092551..1092877(+) (comGG/cglG) [Streptococcus constellatus strain TCV107]
MWKQRVKAGIMLYALFITAVFSLLLQFYLHRQTANHRNFTLNRERIQAYAMAAVANENPKQRNFEQGYVQDQKDEKEFIL
TVTMNTGRRYQFRFPLMHSNQTNDNLDE

Nucleotide


Download         Length: 327 bp        

>NTDB_id=252123 DEH83_RS05605 WP_003070783.1 1092551..1092877(+) (comGG/cglG) [Streptococcus constellatus strain TCV107]
GTGTGGAAACAAAGAGTTAAAGCAGGTATTATGCTCTATGCCCTTTTTATAACAGCTGTCTTTAGCTTACTTTTGCAATT
TTACCTTCATCGGCAAACTGCAAATCACAGGAATTTCACCCTAAACCGAGAGCGAATACAGGCTTATGCAATGGCAGCTG
TAGCAAATGAAAATCCTAAACAAAGGAATTTTGAACAGGGGTATGTGCAAGATCAGAAAGATGAGAAAGAGTTCATCCTG
ACAGTAACAATGAACACTGGTCGCCGTTATCAATTTCGCTTCCCACTTATGCATTCCAATCAAACCAATGACAATTTAGA
CGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae D39

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae R6

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae TIGR4

43

92.593

0.398
  comGG/cglG Streptococcus mitis NCTC 12261

42.424

91.667

0.389
  comGG/cglG Streptococcus mitis SK321

41.414

91.667

0.38