Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   CG478_RS17350 Genome accession   NZ_CP024111
Coordinates   3286996..3289332 (-) Length   778 a.a.
NCBI ID   WP_087095365.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain CH_4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3281996..3294332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG478_RS17330 (CG478_017295) - 3285026..3286084 (-) 1059 WP_048724207.1 AI-2E family transporter -
  CG478_RS17335 (CG478_017300) - 3286275..3286487 (+) 213 WP_012095564.1 hypothetical protein -
  CG478_RS17340 (CG478_017305) - 3286534..3286662 (-) 129 WP_012095565.1 YrzQ family protein -
  CG478_RS17345 (CG478_017310) - 3286681..3286869 (-) 189 WP_012095566.1 hypothetical protein -
  CG478_RS17350 (CG478_017315) recD2 3286996..3289332 (-) 2337 WP_087095365.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CG478_RS17355 (CG478_017320) - 3289433..3290092 (-) 660 WP_012095568.1 tetratricopeptide repeat protein -
  CG478_RS17360 (CG478_017325) mnmA 3290204..3291319 (-) 1116 WP_048724205.1 tRNA 2-thiouridine(34) synthase MnmA -
  CG478_RS17365 (CG478_017330) - 3291336..3292481 (-) 1146 WP_012095570.1 cysteine desulfurase family protein -
  CG478_RS17370 (CG478_017335) cymR 3292517..3292933 (-) 417 WP_012095571.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87595.32 Da        Isoelectric Point: 5.4886

>NTDB_id=252121 CG478_RS17350 WP_087095365.1 3286996..3289332(-) (recD2) [Bacillus cytotoxicus strain CH_4]
MENQHAMDLFEEERKFIKAQVLHTIFHNEENLYSVVSMKVIETNEAYDEKKVMINGHFPRMHEDEVFTLTGYFKEHPKYG
KQYQVETFKKELPQTKTGMVQYLASDLFKGIGKRTAEKIVNHLGEHAISKIMDDPAALEGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHNDRVRAGCFYTLENVS
LQYGHVYMEKEQLVRETMSLLNNREGTVTEEDIVQCIEMMQGEGKIIIEEERIYLASLYYSEKGVVKSIHRLMSQKETPS
FPEAEVLLTLGKIEEQMKVQYAPLQQEAIQTALHQPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNSKDYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIVDEFSMVDIWLANQLLKSLPTNMQVIIVGD
EDQLPSVGPGQVLKDLLNAGIIPTVKLTEIYRQAEGSSVVQLAHAIKNGTLPPDVTKNKQDRSFIACTGNQIVDVVKRVC
ESAKVKGFSAKDVQVLAPMYRGSAGINVLNEALQQVFNPKQEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEII
SIFYAKENVEQQDMVVVSFDGIEVTYTKADLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEEAFRSGVNRLDDAMRQTTLGSRLQEAKGEAQMVVINGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=252121 CG478_RS17350 WP_087095365.1 3286996..3289332(-) (recD2) [Bacillus cytotoxicus strain CH_4]
ATGGAGAATCAACATGCCATGGATTTGTTTGAGGAAGAGAGAAAGTTTATAAAAGCGCAAGTTCTTCATACTATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACAAATGAAGCATATGACGAAAAAAAAGTAATGA
TCAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTATTTACATTAACAGGGTATTTTAAAGAGCATCCTAAATATGGG
AAGCAATATCAAGTTGAAACATTTAAAAAAGAATTGCCCCAAACGAAAACAGGAATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGAATTGGGAAGCGAACAGCTGAAAAAATTGTCAATCATCTTGGAGAACACGCCATTTCTAAAATTATGGATG
ATCCGGCTGCGCTAGAAGGTGTCGTCAATAAGCAAAAAGCGCAAGAAATATATGAGACGATCATTGAGCATCAAGGGCTT
GAAAAAGTGATGAGCTTTTTAAATGGTTATGGATTTGGGACAAAGCTTTCCATTAAAATTTATCAGCAATATAAAGAAAT
GACACTAGAAGTTATTCGAAATAATCCGTACCAGTTGATTGAAGAAGTTGACGGAATTGGCTTTGGAAGAGCAGACGATA
TAGGACGTGCTCTTGGGATATCAGGAAATCATAATGATCGTGTACGAGCGGGATGTTTTTATACGTTGGAGAATGTATCG
CTTCAATATGGTCATGTTTATATGGAGAAGGAGCAGCTTGTACGTGAAACGATGTCCCTTTTAAATAACCGAGAAGGGAC
TGTGACGGAAGAAGATATTGTGCAATGCATCGAAATGATGCAAGGCGAAGGGAAAATCATTATAGAGGAAGAGCGTATTT
ATTTGGCTTCTTTATATTATTCTGAGAAAGGTGTTGTGAAGTCGATTCATCGCCTGATGAGCCAAAAAGAAACGCCGTCA
TTTCCCGAGGCAGAAGTGTTGTTAACGTTAGGTAAGATCGAAGAGCAGATGAAAGTACAGTATGCACCGCTTCAGCAAGA
GGCGATTCAAACAGCACTTCATCAACCGATGATGCTGTTAACCGGTGGCCCAGGAACAGGAAAGACAACAGTTATTAAAG
GAATTGTCGAAATGTATGCATCGCTACATGGATTATCGTTAAATTCTAAAGATTATAGCGATGATAATCCATTTCCGATT
TTATTAACAGCTCCAACAGGTCGTGCGGCAAAGCGAATGAGCGAATCAACAGGTCTTCCTGCATGTACAATTCACCGTTT
GCTTGGTTGGACGCCCGAAGGCTCGTTTCAGCGAAATGAAACAGATCCGGTGCAGGGGAAACTTCTTATTGTCGATGAAT
TTTCTATGGTCGATATTTGGCTTGCAAATCAGCTTTTGAAATCATTGCCGACAAATATGCAAGTCATTATTGTTGGCGAT
GAAGATCAATTGCCATCTGTAGGACCGGGACAAGTATTAAAAGATTTATTAAACGCCGGTATCATTCCAACGGTAAAACT
GACCGAAATTTATCGGCAAGCTGAAGGGTCATCTGTTGTTCAACTTGCTCATGCGATAAAGAATGGAACATTACCGCCAG
ATGTAACGAAAAATAAACAAGATCGTTCCTTTATTGCGTGCACGGGGAATCAAATTGTTGATGTTGTAAAACGAGTGTGT
GAAAGCGCAAAAGTAAAGGGATTTAGTGCAAAAGATGTGCAAGTGTTAGCACCTATGTATCGCGGATCGGCAGGGATTAA
TGTGTTAAATGAGGCATTGCAACAAGTCTTTAACCCGAAACAAGAAAAGAGTAAAGAAATTGCTTATGGTGATGTTGTAT
ATAGAAGAGGCGATAAGGTTCTTCAATTAGTCAATCAACCGGAAAGTCAAGTGTTTAATGGAGATATTGGCGAAATTATT
TCTATATTTTACGCGAAGGAAAATGTAGAGCAACAAGATATGGTTGTTGTTTCATTTGATGGCATTGAAGTGACATATAC
GAAGGCTGATTTGAATCAAATTACACATGCATATTGCTGCTCCATTCATAAGTCGCAAGGGAGTGAATTTCCGATTGTAA
TTATGCCGATTGTAAAAAGTTATAACCGCATGTTGCGTCGGAATTTAATTTATACGGGTATTACAAGAAGTAAAAAGTTT
TTGATTATCTGCGGAGAAGAAGAAGCTTTTCGATCTGGAGTGAACCGTCTCGATGATGCCATGCGGCAAACAACTTTAGG
AAGTCGTTTGCAAGAGGCAAAAGGCGAAGCACAGATGGTTGTTATTAATGGAGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.775

100

0.587

Multiple sequence alignment