Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CRN81_RS17810 Genome accession   NZ_CP024028
Coordinates   3818821..3820044 (-) Length   407 a.a.
NCBI ID   WP_011137374.1    Uniprot ID   -
Organism   Chromobacterium violaceum strain CV1192     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3813821..3825044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN81_RS17780 (CRN81_17775) tsaE 3814547..3815038 (+) 492 WP_011137368.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  CRN81_RS17785 (CRN81_17780) - 3814999..3816240 (+) 1242 WP_043596725.1 N-acetylmuramoyl-L-alanine amidase -
  CRN81_RS17790 (CRN81_17785) yacG 3816313..3816504 (-) 192 WP_011137370.1 DNA gyrase inhibitor YacG -
  CRN81_RS17795 (CRN81_17790) zapD 3816510..3817268 (-) 759 WP_011137371.1 cell division protein ZapD -
  CRN81_RS17800 (CRN81_17795) coaE 3817305..3817919 (-) 615 WP_099427576.1 dephospho-CoA kinase -
  CRN81_RS17805 (CRN81_17800) - 3817904..3818809 (-) 906 WP_196303056.1 prepilin peptidase -
  CRN81_RS17810 (CRN81_17805) pilC 3818821..3820044 (-) 1224 WP_011137374.1 type II secretion system F family protein Machinery gene
  CRN81_RS17815 (CRN81_17810) pilF 3820170..3821876 (-) 1707 WP_011137375.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CRN81_RS17820 (CRN81_17815) - 3822046..3823152 (-) 1107 WP_099427577.1 porin -
  CRN81_RS17825 (CRN81_17820) - 3823559..3823876 (-) 318 WP_011137378.1 ComEA family DNA-binding protein -
  CRN81_RS17830 (CRN81_17825) - 3823945..3824766 (-) 822 WP_099427578.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44911.77 Da        Isoelectric Point: 10.0089

>NTDB_id=251309 CRN81_RS17810 WP_011137374.1 3818821..3820044(-) (pilC) [Chromobacterium violaceum strain CV1192]
MATTAAKKANPGYIWEWEGKDKSGKMIRGELRAESEAVAKTQLRRQGINVAKIRRRRSGFGKKITEKDITLFTRQLSTMM
RAGVPLLQAFDIAAKGHSNPAVTRMLLEVRADVETGLSLAEAFRKRPLYFDKLFCNIIAAGEAGGVLDTLLDKLATYKEK
VMAIKSKIKSAMIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDQFVHFWWLIFGTLFGAIFAF
FYAFKRTPKMQEQMDRILLRLPVIGDIIRKATIARWARTLSTLFSAGVPLVEALDSVGGAAGNQVYAEATRRIQADVSTG
SSLNYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGILIGGLVIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=251309 CRN81_RS17810 WP_011137374.1 3818821..3820044(-) (pilC) [Chromobacterium violaceum strain CV1192]
ATGGCGACCACGGCAGCCAAAAAGGCGAATCCGGGCTACATCTGGGAATGGGAAGGCAAGGACAAGTCCGGCAAGATGAT
ACGGGGCGAACTGCGCGCCGAGTCGGAGGCCGTCGCCAAGACCCAGTTGCGGCGGCAGGGCATCAATGTCGCCAAGATCC
GCCGGCGGCGCAGCGGTTTCGGCAAGAAGATCACCGAAAAGGACATCACGCTGTTCACCCGCCAATTGTCGACGATGATG
CGCGCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGCGGCCAAGGGCCACAGCAATCCGGCGGTGACCCGGATGCTGCT
GGAGGTGCGGGCGGATGTCGAAACCGGCCTGTCGCTGGCCGAGGCCTTCCGCAAGCGCCCGCTGTATTTCGACAAGCTGT
TCTGCAACATCATCGCGGCCGGCGAGGCGGGCGGCGTGCTGGATACCTTGCTGGACAAGCTGGCCACCTATAAGGAAAAG
GTGATGGCCATCAAGTCCAAGATCAAGTCGGCGATGATCTATCCGTCGGCCATCGTCGGCACCGCCTTCATCATCACCGC
GGTGATCATGATTTACGTGATCCCGGCGTTCAAGGACCTGTTCTCCAGCTTCGGCGCCAATCTGCCGGCGCCGACGCTGT
TCGTGATCTGGCTGTCGGACCAGTTCGTCCATTTCTGGTGGCTGATCTTCGGCACGCTGTTCGGCGCGATATTCGCCTTT
TTCTACGCGTTCAAGCGCACGCCCAAGATGCAGGAGCAGATGGACCGCATCCTGCTGCGCTTGCCGGTGATCGGCGACAT
CATACGCAAGGCCACCATCGCGCGCTGGGCGCGCACCTTGTCCACGCTGTTTTCCGCCGGCGTCCCGCTGGTGGAGGCGC
TGGACTCGGTCGGCGGGGCGGCCGGCAACCAGGTTTACGCCGAGGCGACGCGGCGCATCCAGGCCGATGTCAGCACCGGT
TCCAGCCTCAATTACTCGATGCAGCGCACCGACTTGTTCCCTAACATGGTGCTGCAGATGACTTCGATAGGCGAAGAGTC
CGGCTCGCTCGACCAGATGCTGGACAAGGTGGCCGACTTTTACGAGGAAGAAGTGGATAATGCGGTGGCCGCGCTGTCCA
GCCTGCTGGAGCCGGCGATCATGGTGATTCTGGGGATATTGATAGGCGGGTTGGTGATCGCGATGTACATGCCGATTTTC
AAGATGGGCCAGGTGGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.713

99.263

0.533
  pilC Pseudomonas stutzeri DSM 10701

53.218

99.263

0.528
  pilG Neisseria gonorrhoeae MS11

53.453

96.069

0.514
  pilG Neisseria meningitidis 44/76-A

53.453

96.069

0.514
  pilC Acinetobacter baylyi ADP1

50.369

100

0.504
  pilC Acinetobacter baumannii D1279779

49.386

100

0.494
  pilC Vibrio campbellii strain DS40M4

37.74

100

0.386
  pilC Vibrio cholerae strain A1552

36.935

97.789

0.361
  pilC Thermus thermophilus HB27

36.842

98.034

0.361

Multiple sequence alignment