Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | MKLM6_RS00970 | Genome accession | NZ_CP023669 |
| Coordinates | 213576..214793 (-) | Length | 405 a.a. |
| NCBI ID | WP_064020098.1 | Uniprot ID | A0A172U3E0 |
| Organism | Methylomonas koyamae strain LM6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 208576..219793
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKLM6_RS00940 (MKLM6_0190) | - | 209264..210202 (+) | 939 | WP_096875532.1 | Nudix family hydrolase | - |
| MKLM6_RS00945 (MKLM6_0191) | - | 210241..211026 (-) | 786 | WP_064040819.1 | class I SAM-dependent methyltransferase | - |
| MKLM6_RS00950 (MKLM6_0192) | - | 211049..211264 (-) | 216 | WP_064040818.1 | DNA gyrase inhibitor YacG | - |
| MKLM6_RS00955 (MKLM6_0193) | zapD | 211264..212037 (-) | 774 | WP_082877665.1 | cell division protein ZapD | - |
| MKLM6_RS00960 (MKLM6_0194) | coaE | 212034..212645 (-) | 612 | WP_096875533.1 | dephospho-CoA kinase | - |
| MKLM6_RS00965 (MKLM6_0195) | pilD | 212649..213515 (-) | 867 | WP_096875534.1 | prepilin peptidase | Machinery gene |
| MKLM6_RS00970 (MKLM6_0196) | pilC | 213576..214793 (-) | 1218 | WP_064020098.1 | type II secretion system F family protein | Machinery gene |
| MKLM6_RS00975 (MKLM6_0197) | pilB | 214796..216511 (-) | 1716 | WP_064020099.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| MKLM6_RS00980 (MKLM6_0198) | thiC | 216670..218538 (-) | 1869 | WP_064028404.1 | phosphomethylpyrimidine synthase ThiC | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44415.43 Da Isoelectric Point: 7.2458
>NTDB_id=249161 MKLM6_RS00970 WP_064020098.1 213576..214793(-) (pilC) [Methylomonas koyamae strain LM6]
MAKQEEQIEFNWDGFDKQNKKTRGTISAKSEVIARAELRRMGIRVVGIKPKAKPLFSPRVQKITPGDIAVFARQLATMLA
AGVPLVQSFDIIGRGHDNASMSEMLLSIKADVEGGDTLAQALGRKPLYFDALFCNLVEAGEHAGVLETLLDKIATYKEKT
ESIKKKVKKALTYPVAVLVVAFIVTAILLVFVVPVFEDLFKGFGADLPAFTQFVIELSAWVQEWWWAVVGVLFIGGYTFT
YFKKRSKAFNHFLDRMLLKIPVVGMILQKSAIARFARTLSTMSAAGVPLVEALVSVAGACGNILFYEAVMKVRDDVATGQ
QLKFALETTGMFPNMVVQMVAIGEESGSIDAMLDKVADFYEEEVDNLVDNLSSLMEPIIMVILGILVGGLIVAMYLPIFK
LGAAI
MAKQEEQIEFNWDGFDKQNKKTRGTISAKSEVIARAELRRMGIRVVGIKPKAKPLFSPRVQKITPGDIAVFARQLATMLA
AGVPLVQSFDIIGRGHDNASMSEMLLSIKADVEGGDTLAQALGRKPLYFDALFCNLVEAGEHAGVLETLLDKIATYKEKT
ESIKKKVKKALTYPVAVLVVAFIVTAILLVFVVPVFEDLFKGFGADLPAFTQFVIELSAWVQEWWWAVVGVLFIGGYTFT
YFKKRSKAFNHFLDRMLLKIPVVGMILQKSAIARFARTLSTMSAAGVPLVEALVSVAGACGNILFYEAVMKVRDDVATGQ
QLKFALETTGMFPNMVVQMVAIGEESGSIDAMLDKVADFYEEEVDNLVDNLSSLMEPIIMVILGILVGGLIVAMYLPIFK
LGAAI
Nucleotide
Download Length: 1218 bp
>NTDB_id=249161 MKLM6_RS00970 WP_064020098.1 213576..214793(-) (pilC) [Methylomonas koyamae strain LM6]
ATGGCAAAACAAGAAGAGCAGATCGAATTCAACTGGGACGGCTTCGACAAACAGAACAAGAAAACCAGGGGCACCATCAG
CGCCAAGAGCGAGGTAATCGCCCGCGCCGAATTGCGGCGGATGGGCATCAGGGTGGTCGGCATCAAACCCAAGGCGAAAC
CCTTGTTCAGTCCGCGGGTACAAAAAATCACGCCGGGCGATATCGCGGTATTCGCCCGCCAGTTGGCAACGATGCTGGCG
GCGGGGGTGCCGTTGGTGCAGTCGTTCGATATCATCGGCAGGGGCCACGACAACGCCAGTATGTCGGAAATGCTGCTGTC
GATCAAAGCCGACGTCGAGGGCGGCGACACGCTGGCACAGGCGCTAGGCCGCAAGCCTTTGTATTTCGATGCTCTGTTCT
GCAATCTGGTCGAAGCCGGCGAGCATGCCGGGGTACTGGAAACCCTGTTGGACAAAATCGCCACCTACAAGGAAAAAACC
GAATCGATCAAGAAAAAAGTCAAAAAAGCCCTGACCTATCCGGTTGCGGTTCTGGTGGTAGCGTTTATCGTCACGGCGAT
TTTGTTGGTATTCGTGGTGCCGGTGTTCGAGGATTTGTTTAAAGGCTTCGGCGCCGATTTGCCGGCCTTCACCCAATTCG
TCATCGAATTGTCGGCCTGGGTACAGGAGTGGTGGTGGGCCGTGGTCGGCGTGCTGTTTATCGGCGGTTACACGTTTACC
TACTTTAAGAAGCGCTCCAAGGCCTTCAACCATTTTCTGGACCGGATGCTGCTAAAAATCCCGGTGGTCGGCATGATCCT
GCAAAAATCGGCGATTGCCCGCTTCGCCCGCACGCTGTCGACGATGTCGGCCGCCGGCGTGCCGTTGGTCGAAGCCTTGG
TCTCGGTCGCCGGCGCCTGCGGCAACATCCTGTTCTACGAAGCCGTGATGAAGGTACGCGACGACGTCGCCACCGGCCAG
CAATTGAAATTCGCTTTGGAAACCACCGGCATGTTTCCGAATATGGTGGTACAAATGGTGGCCATCGGCGAGGAGTCCGG
TTCGATCGACGCGATGCTGGACAAGGTCGCCGACTTTTACGAGGAAGAGGTCGACAACCTGGTCGATAACCTGAGCAGCT
TGATGGAACCTATCATCATGGTGATCTTGGGTATTCTGGTCGGCGGCTTGATCGTGGCAATGTATTTGCCGATCTTCAAA
TTGGGCGCCGCTATCTAA
ATGGCAAAACAAGAAGAGCAGATCGAATTCAACTGGGACGGCTTCGACAAACAGAACAAGAAAACCAGGGGCACCATCAG
CGCCAAGAGCGAGGTAATCGCCCGCGCCGAATTGCGGCGGATGGGCATCAGGGTGGTCGGCATCAAACCCAAGGCGAAAC
CCTTGTTCAGTCCGCGGGTACAAAAAATCACGCCGGGCGATATCGCGGTATTCGCCCGCCAGTTGGCAACGATGCTGGCG
GCGGGGGTGCCGTTGGTGCAGTCGTTCGATATCATCGGCAGGGGCCACGACAACGCCAGTATGTCGGAAATGCTGCTGTC
GATCAAAGCCGACGTCGAGGGCGGCGACACGCTGGCACAGGCGCTAGGCCGCAAGCCTTTGTATTTCGATGCTCTGTTCT
GCAATCTGGTCGAAGCCGGCGAGCATGCCGGGGTACTGGAAACCCTGTTGGACAAAATCGCCACCTACAAGGAAAAAACC
GAATCGATCAAGAAAAAAGTCAAAAAAGCCCTGACCTATCCGGTTGCGGTTCTGGTGGTAGCGTTTATCGTCACGGCGAT
TTTGTTGGTATTCGTGGTGCCGGTGTTCGAGGATTTGTTTAAAGGCTTCGGCGCCGATTTGCCGGCCTTCACCCAATTCG
TCATCGAATTGTCGGCCTGGGTACAGGAGTGGTGGTGGGCCGTGGTCGGCGTGCTGTTTATCGGCGGTTACACGTTTACC
TACTTTAAGAAGCGCTCCAAGGCCTTCAACCATTTTCTGGACCGGATGCTGCTAAAAATCCCGGTGGTCGGCATGATCCT
GCAAAAATCGGCGATTGCCCGCTTCGCCCGCACGCTGTCGACGATGTCGGCCGCCGGCGTGCCGTTGGTCGAAGCCTTGG
TCTCGGTCGCCGGCGCCTGCGGCAACATCCTGTTCTACGAAGCCGTGATGAAGGTACGCGACGACGTCGCCACCGGCCAG
CAATTGAAATTCGCTTTGGAAACCACCGGCATGTTTCCGAATATGGTGGTACAAATGGTGGCCATCGGCGAGGAGTCCGG
TTCGATCGACGCGATGCTGGACAAGGTCGCCGACTTTTACGAGGAAGAGGTCGACAACCTGGTCGATAACCTGAGCAGCT
TGATGGAACCTATCATCATGGTGATCTTGGGTATTCTGGTCGGCGGCTTGATCGTGGCAATGTATTTGCCGATCTTCAAA
TTGGGCGCCGCTATCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
59.75 |
98.765 |
0.59 |
| pilC | Pseudomonas stutzeri DSM 10701 |
56.313 |
97.778 |
0.551 |
| pilC | Acinetobacter baumannii D1279779 |
53.652 |
98.025 |
0.526 |
| pilC | Acinetobacter baylyi ADP1 |
51.961 |
100 |
0.523 |
| pilG | Neisseria meningitidis 44/76-A |
47.059 |
100 |
0.474 |
| pilG | Neisseria gonorrhoeae MS11 |
47.059 |
100 |
0.474 |
| pilC | Vibrio cholerae strain A1552 |
43.038 |
97.531 |
0.42 |
| pilC | Vibrio campbellii strain DS40M4 |
41.117 |
97.284 |
0.4 |
| pilC | Thermus thermophilus HB27 |
36.591 |
98.519 |
0.36 |