Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY61_RS06160 Genome accession   NZ_CP028766
Coordinates   1307182..1307787 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain A8     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1302182..1312787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY61_RS24365 - 1302736..1302834 (+) 99 Protein_1186 hypothetical protein -
  AOY61_RS06130 (AOY61_06585) rsmS 1302887..1303048 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY61_RS06135 (AOY61_06590) priC 1303062..1303589 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  AOY61_RS06140 (AOY61_06595) ybaN 1303659..1304036 (+) 378 WP_001188905.1 DUF454 family protein -
  AOY61_RS06145 (AOY61_06605) apt 1304189..1304740 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY61_RS06150 (AOY61_06610) dnaX 1304869..1306800 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  AOY61_RS06155 (AOY61_06615) ybaB 1306853..1307182 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY61_RS06160 (AOY61_06620) recR 1307182..1307787 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AOY61_RS06165 (AOY61_06625) htpG 1307897..1309771 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  AOY61_RS06170 (AOY61_06635) adk 1309952..1310596 (+) 645 WP_001220233.1 adenylate kinase -
  AOY61_RS06175 (AOY61_06640) hemH 1310832..1311794 (+) 963 WP_001250088.1 ferrochelatase -
  AOY61_RS06180 (AOY61_06645) aes 1311791..1312750 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=247900 AOY61_RS06160 WP_001195025.1 1307182..1307787(+) (recR) [Escherichia coli strain A8]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=247900 AOY61_RS06160 WP_001195025.1 1307182..1307787(+) (recR) [Escherichia coli strain A8]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment