Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CCZ27_RS02910 Genome accession   NZ_CP023439
Coordinates   628699..629928 (-) Length   409 a.a.
NCBI ID   WP_096445330.1    Uniprot ID   -
Organism   Thauera sp. K11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 623699..634928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ27_RS02890 (CCZ27_02890) aspS 624481..626292 (-) 1812 WP_096445322.1 aspartate--tRNA ligase -
  CCZ27_RS02895 (CCZ27_02895) - 626360..626983 (-) 624 WP_096445324.1 DUF502 domain-containing protein -
  CCZ27_RS02900 (CCZ27_02900) - 627006..627275 (-) 270 WP_096445326.1 zinc ribbon domain-containing protein -
  CCZ27_RS02905 (CCZ27_02905) pilD 627771..628625 (-) 855 WP_096445328.1 A24 family peptidase Machinery gene
  CCZ27_RS02910 (CCZ27_02910) pilC 628699..629928 (-) 1230 WP_096445330.1 type II secretion system F family protein Machinery gene
  CCZ27_RS02915 (CCZ27_02915) - 629951..630361 (-) 411 Protein_587 type IV-A pilus assembly ATPase PilB -
  CCZ27_RS02920 (CCZ27_02920) - 630450..631535 (+) 1086 WP_096445332.1 IS5 family transposase -
  CCZ27_RS02925 (CCZ27_02925) - 631751..633055 (-) 1305 Protein_589 ATPase, T2SS/T4P/T4SS family -
  CCZ27_RS02930 (CCZ27_02930) ccsA 633143..633970 (-) 828 WP_096445334.1 cytochrome c biogenesis protein CcsA -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 43982.64 Da        Isoelectric Point: 9.9527

>NTDB_id=247158 CCZ27_RS02910 WP_096445330.1 628699..629928(-) (pilC) [Thauera sp. K11]
MATASRAARAIAPKEDLYNWEGKDKSGKVIRGEMRATGDKVVQATLRRQGILVTKVKKQALSRGGRIGERDIALFTRQLA
TMMKSGVPLLQAFDIGIKGSGNPALSRLLNEIRNDVETGSSLSQAFAKHPVQFDRLFVNLVAAGEQAGILDNLLDRLATY
KEKIIAIKGKIKSALFYPAAVVVVAALVISVMMLFVIPEFKNVFSSFGADLPGPTLIVIGMSDFFVEYWYVLLGIIVAAI
GGIIFTYRRSPSVQVAVDRLILKLPVVGDIVRKATVARWTRTLSTMFAAGVPLVEALDSVGGASGNHVYVTATREIQSEV
STGSSLTVAMQNARVFPSMVVQMVSIGEESGQLDSMLGKVADFFEQEVDDAVAGLSQLLEPLIMVFLGTVIGGLVVAMYL
PIFKLGAVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=247158 CCZ27_RS02910 WP_096445330.1 628699..629928(-) (pilC) [Thauera sp. K11]
ATGGCCACAGCTAGCCGCGCGGCGCGTGCCATCGCGCCCAAGGAAGACCTGTACAACTGGGAAGGCAAGGACAAGAGCGG
CAAGGTGATACGCGGCGAGATGCGCGCGACCGGCGACAAGGTCGTGCAGGCAACGCTGCGCCGGCAGGGCATCCTCGTCA
CCAAGGTCAAGAAGCAGGCGCTGTCGCGCGGCGGGCGCATCGGCGAGAGGGACATCGCCCTGTTCACCCGCCAGCTCGCG
ACGATGATGAAATCCGGCGTGCCGCTGCTGCAAGCCTTCGACATCGGCATCAAGGGTTCGGGCAACCCGGCGCTGTCGCG
CCTGCTCAACGAGATCCGCAACGACGTCGAGACCGGGTCCAGCCTGTCGCAGGCATTCGCCAAGCATCCGGTGCAATTCG
ACCGCCTGTTCGTGAACCTCGTCGCCGCGGGCGAGCAGGCCGGCATCCTCGACAACCTGCTCGACCGCCTCGCCACCTAC
AAGGAAAAGATCATCGCGATCAAGGGCAAGATCAAGTCGGCCCTGTTCTATCCGGCGGCGGTCGTGGTGGTGGCCGCGCT
GGTGATATCGGTGATGATGCTGTTCGTGATCCCCGAGTTCAAGAACGTCTTCAGCAGCTTCGGCGCCGACCTCCCGGGCC
CCACGCTGATCGTGATCGGGATGTCGGATTTCTTCGTCGAGTACTGGTACGTGCTGCTGGGCATCATCGTCGCCGCCATC
GGCGGCATCATATTCACGTACAGGCGCTCGCCGTCGGTGCAGGTCGCGGTGGACCGCCTGATCCTCAAGCTGCCGGTAGT
GGGCGACATCGTGCGCAAGGCCACGGTCGCGCGCTGGACGCGCACGCTGTCCACGATGTTCGCGGCCGGCGTGCCGCTGG
TCGAGGCACTCGATTCGGTGGGCGGCGCCTCCGGCAACCACGTCTATGTCACCGCGACACGGGAGATCCAGAGCGAGGTG
AGCACCGGCAGCAGCCTCACCGTGGCCATGCAGAATGCCCGCGTGTTCCCCAGCATGGTGGTGCAGATGGTGTCGATCGG
CGAGGAATCCGGCCAGCTCGACTCGATGCTGGGCAAGGTCGCCGATTTCTTCGAGCAGGAGGTCGACGATGCGGTGGCCG
GGCTGTCGCAACTGCTCGAACCGCTGATCATGGTCTTCCTGGGCACCGTCATCGGTGGCCTGGTGGTCGCCATGTACCTG
CCGATCTTCAAGCTCGGCGCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.724

99.267

0.513
  pilC Legionella pneumophila strain ERS1305867

51.75

97.8

0.506
  pilG Neisseria meningitidis 44/76-A

49.877

99.022

0.494
  pilG Neisseria gonorrhoeae MS11

50.5

97.8

0.494
  pilC Acinetobacter baylyi ADP1

48.995

97.311

0.477
  pilC Acinetobacter baumannii D1279779

48.363

97.066

0.469
  pilC Vibrio cholerae strain A1552

42.929

96.822

0.416
  pilC Vibrio campbellii strain DS40M4

41.278

99.511

0.411
  pilC Thermus thermophilus HB27

37.65

100

0.384

Multiple sequence alignment