Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CCZ27_RS02905 Genome accession   NZ_CP023439
Coordinates   627771..628625 (-) Length   284 a.a.
NCBI ID   WP_096445328.1    Uniprot ID   -
Organism   Thauera sp. K11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 622771..633625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ27_RS02890 (CCZ27_02890) aspS 624481..626292 (-) 1812 WP_096445322.1 aspartate--tRNA ligase -
  CCZ27_RS02895 (CCZ27_02895) - 626360..626983 (-) 624 WP_096445324.1 DUF502 domain-containing protein -
  CCZ27_RS02900 (CCZ27_02900) - 627006..627275 (-) 270 WP_096445326.1 zinc ribbon domain-containing protein -
  CCZ27_RS02905 (CCZ27_02905) pilD 627771..628625 (-) 855 WP_096445328.1 A24 family peptidase Machinery gene
  CCZ27_RS02910 (CCZ27_02910) pilC 628699..629928 (-) 1230 WP_096445330.1 type II secretion system F family protein Machinery gene
  CCZ27_RS02915 (CCZ27_02915) - 629951..630361 (-) 411 Protein_587 type IV-A pilus assembly ATPase PilB -
  CCZ27_RS02920 (CCZ27_02920) - 630450..631535 (+) 1086 WP_096445332.1 IS5 family transposase -
  CCZ27_RS02925 (CCZ27_02925) - 631751..633055 (-) 1305 Protein_589 ATPase, T2SS/T4P/T4SS family -

Sequence

Protein


Download         Length: 284 a.a.        Molecular weight: 30711.30 Da        Isoelectric Point: 8.1476

>NTDB_id=247157 CCZ27_RS02905 WP_096445328.1 627771..628625(-) (pilD) [Thauera sp. K11]
MLELLRDPAAFVPFASLIGLFVGSFLNVVIHRLPRMMERDWHAQAAELRGEPPPQAERFNLAVPRSRCPHCGHLITALEN
IPVVSYVVLRGRCSHCGAPIGKRYPVVELLTAAVSGYAAWHFGFGLAALGALLFLWAMIALAFIDLDTQLLPDDLTQPLL
WLGLALNLGATYTSLGSAVLGAMAGYLALWSIYWLFKLVTGKEGMGYGDFKLLAAIGAWLGWQTLPLTILLSSLVGAAVG
IGLILFGRHGRDTPIPFGPYLAVAGIIALFWGEAITRRYLGGAF

Nucleotide


Download         Length: 855 bp        

>NTDB_id=247157 CCZ27_RS02905 WP_096445328.1 627771..628625(-) (pilD) [Thauera sp. K11]
ATGCTCGAACTCCTGCGCGACCCCGCCGCCTTCGTCCCCTTCGCGTCGCTGATCGGCCTCTTCGTGGGCAGCTTCCTCAA
CGTCGTGATCCATCGCCTGCCCCGCATGATGGAGCGCGACTGGCATGCCCAGGCCGCCGAACTGCGCGGCGAGCCGCCGC
CGCAGGCCGAGCGCTTCAACCTCGCCGTGCCGCGCTCACGCTGCCCGCACTGCGGACACCTGATCACCGCGCTGGAGAAC
ATCCCGGTCGTCAGCTACGTCGTGCTGCGCGGCCGCTGCAGCCATTGCGGCGCGCCGATCGGCAAGCGCTACCCGGTGGT
CGAACTGCTGACCGCCGCCGTGTCGGGCTATGCCGCCTGGCACTTCGGCTTCGGCCTCGCCGCGCTCGGCGCGCTGCTGT
TCCTGTGGGCGATGATCGCGCTCGCCTTCATCGACCTCGACACCCAGTTGCTGCCCGACGACCTGACCCAGCCCCTGCTG
TGGCTGGGGCTGGCACTCAACCTCGGCGCCACCTACACGAGCCTGGGCAGCGCGGTGCTCGGCGCCATGGCGGGCTATCT
CGCGCTGTGGTCGATCTACTGGCTGTTCAAGCTCGTCACCGGCAAGGAGGGCATGGGCTACGGCGACTTCAAGCTGCTCG
CCGCCATCGGCGCCTGGCTGGGCTGGCAGACGCTGCCGCTCACCATCCTGCTGTCCTCGCTGGTCGGGGCGGCCGTGGGC
ATCGGGCTGATCCTCTTCGGCCGCCACGGCCGCGACACACCCATCCCCTTCGGCCCCTACCTGGCGGTGGCCGGGATCAT
CGCGCTGTTCTGGGGCGAGGCGATCACCCGCCGCTACCTCGGCGGCGCGTTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(133-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

57.04

97.535

0.556
  pilD Vibrio campbellii strain DS40M4

55.396

97.887

0.542
  pilD Acinetobacter baumannii D1279779

51.481

95.07

0.489
  pilD Acinetobacter nosocomialis M2

51.111

95.07

0.486
  pilD Neisseria gonorrhoeae MS11

48.699

94.718

0.461

Multiple sequence alignment