Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Aba10324_RS12635 Genome accession   NZ_CP023022
Coordinates   2603542..2604768 (-) Length   408 a.a.
NCBI ID   WP_118878204.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 10324     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2598542..2609768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba10324_RS12605 (Aba10324_12610) - 2598574..2599884 (+) 1311 WP_000753286.1 tetratricopeptide repeat protein -
  Aba10324_RS12610 (Aba10324_12615) - 2599961..2600287 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  Aba10324_RS12615 (Aba10324_12620) rlmB 2600389..2601138 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Aba10324_RS12620 (Aba10324_12625) - 2601173..2602087 (+) 915 WP_077108832.1 DMT family transporter -
  Aba10324_RS12625 (Aba10324_12630) coaE 2602084..2602680 (-) 597 WP_118878203.1 dephospho-CoA kinase -
  Aba10324_RS19360 (Aba10324_12635) pilD 2602682..2603542 (-) 861 WP_001152269.1 prepilin peptidase Machinery gene
  Aba10324_RS12635 (Aba10324_12640) pilC 2603542..2604768 (-) 1227 WP_118878204.1 type II secretion system F family protein Machinery gene
  Aba10324_RS12640 (Aba10324_12645) pilB 2604798..2606510 (-) 1713 WP_001274989.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Aba10324_RS12645 (Aba10324_12650) tpiA 2606801..2607595 (+) 795 WP_077108833.1 triose-phosphate isomerase -
  Aba10324_RS12650 (Aba10324_12655) secG 2607608..2607937 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -
  Aba10324_RS12670 (Aba10324_12675) rimP 2608579..2609103 (+) 525 WP_000777730.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44964.48 Da        Isoelectric Point: 9.9566

>NTDB_id=244185 Aba10324_RS12635 WP_118878204.1 2603542..2604768(-) (pilC) [Acinetobacter baumannii strain 10324]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKLTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRISNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=244185 Aba10324_RS12635 WP_118878204.1 2603542..2604768(-) (pilC) [Acinetobacter baumannii strain 10324]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAATTGACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAATTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCGCTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTAGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGATCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.755

100

0.998
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria meningitidis 44/76-A

47.236

97.549

0.461
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment