Detailed information NTG0244199

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Aba10324_RS19360
• Genome accession: NZ_CP023022
• Coordinates: 2602682..2603542 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152269.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain 10324
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2597682..2608542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Aba10324_RS12605 (Aba10324_12610)	-	2598574..2599884 (+)	1311	WP_000753286.1	tetratricopeptide repeat protein	-
Aba10324_RS12610 (Aba10324_12615)	-	2599961..2600287 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
Aba10324_RS12615 (Aba10324_12620)	rlmB	2600389..2601138 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
Aba10324_RS12620 (Aba10324_12625)	-	2601173..2602087 (+)	915	WP_077108832.1	DMT family transporter	-
Aba10324_RS12625 (Aba10324_12630)	coaE	2602084..2602680 (-)	597	WP_118878203.1	dephospho-CoA kinase	-
Aba10324_RS19360 (Aba10324_12635)	pilD	2602682..2603542 (-)	861	WP_001152269.1	prepilin peptidase	Machinery gene
Aba10324_RS12635 (Aba10324_12640)	pilC	2603542..2604768 (-)	1227	WP_118878204.1	type II secretion system F family protein	Machinery gene
Aba10324_RS12640 (Aba10324_12645)	pilB	2604798..2606510 (-)	1713	WP_001274989.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Aba10324_RS12645 (Aba10324_12650)	tpiA	2606801..2607595 (+)	795	WP_077108833.1	triose-phosphate isomerase	-
Aba10324_RS12650 (Aba10324_12655)	secG	2607608..2607937 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32029.45 Da
• Isoelectric Point: 6.6663

>NTDB_id=244199 Aba10324_RS19360 WP_001152269.1 2602682..2603542(-) (pilD) [Acinetobacter baumannii strain 10324]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=244199 Aba10324_RS19360 WP_001152269.1 2602682..2603542(-) (pilD) [Acinetobacter baumannii strain 10324]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437