Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SH_RS08750 Genome accession   NC_007168
Coordinates   1847237..1847665 (-) Length   142 a.a.
NCBI ID   WP_011276070.1    Uniprot ID   Q4L5H4
Organism   Staphylococcus haemolyticus JCSC1435     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1807061..1856674 1847237..1847665 within 0


Gene organization within MGE regions


Location: 1807061..1856674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH_RS08520 - 1807061..1807459 (-) 399 WP_041615168.1 hypothetical protein -
  SH_RS08525 (SH1747) - 1807449..1807982 (-) 534 WP_011276030.1 Panacea domain-containing protein -
  SH_RS08530 (SH1748) - 1808214..1809608 (-) 1395 WP_011276031.1 N-acetylmuramoyl-L-alanine amidase -
  SH_RS08535 (SH1749) - 1809609..1809869 (-) 261 WP_011276032.1 phage holin -
  SH_RS08540 (SH1750) - 1809920..1810318 (-) 399 WP_011276033.1 DUF4060 family protein -
  SH_RS08545 (SH1751) - 1810302..1810721 (-) 420 WP_011276034.1 hypothetical protein -
  SH_RS13780 (SH1752) - 1810758..1810907 (-) 150 WP_011276035.1 hypothetical protein -
  SH_RS08550 (SH1753) - 1810897..1813401 (-) 2505 WP_011276036.1 phage tail protein -
  SH_RS08555 (SH1754) - 1813415..1815226 (-) 1812 WP_011276037.1 polysaccharide deacetylase family protein -
  SH_RS08560 (SH1755) - 1815238..1816071 (-) 834 WP_011276038.1 phage tail domain-containing protein -
  SH_RS13040 (SH1756) - 1816074..1820537 (-) 4464 WP_011276039.1 phage tail tape measure protein -
  SH_RS13045 (SH1757) - 1820766..1821674 (-) 909 WP_011276040.1 HNH endonuclease -
  SH_RS08585 (SH1758) - 1821811..1823889 (-) 2079 WP_011276041.1 phage tail tape measure protein -
  SH_RS13665 gpGT 1823950..1824105 (-) 156 WP_017175428.1 phage tail assembly chaperone GT -
  SH_RS08595 (SH1759) - 1824212..1825027 (-) 816 WP_000160701.1 AAA family ATPase -
  SH_RS08600 (SH1760) - 1825020..1826462 (-) 1443 WP_000790709.1 Mu transposase C-terminal domain-containing protein -
  SH_RS08605 (SH1761) - 1826434..1827027 (-) 594 WP_000690636.1 recombinase family protein -
  SH_RS08610 (SH1762) blaI 1827291..1827671 (-) 381 WP_001284656.1 penicillinase repressor BlaI -
  SH_RS08615 (SH1763) blaR1 1827661..1829418 (-) 1758 WP_011276042.1 beta-lactam sensor/signal transducer BlaR1 -
  SH_RS08620 (SH1764) - 1829525..1830370 (+) 846 WP_000733283.1 BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1 -
  SH_RS08625 (SH1765) gpG 1830706..1831068 (-) 363 WP_011276043.1 phage tail assembly chaperone G -
  SH_RS13785 (SH1766) - 1831130..1831297 (-) 168 WP_011276044.1 hypothetical protein -
  SH_RS08630 (SH1767) - 1831311..1831952 (-) 642 WP_011276045.1 major tail protein -
  SH_RS08635 (SH1768) - 1831953..1832360 (-) 408 WP_011276046.1 hypothetical protein -
  SH_RS08640 (SH1769) - 1832357..1832779 (-) 423 WP_011276047.1 HK97 gp10 family phage protein -
  SH_RS08645 (SH1770) - 1832769..1833140 (-) 372 WP_011276048.1 head-tail adaptor protein -
  SH_RS08650 (SH1771) - 1833130..1833426 (-) 297 WP_011276049.1 hypothetical protein -
  SH_RS08655 (SH1772) - 1833444..1834622 (-) 1179 WP_011276050.1 phage major capsid protein -
  SH_RS08660 (SH1773) - 1834685..1835551 (-) 867 WP_011276051.1 head maturation protease, ClpP-related -
  SH_RS08665 (SH1774) - 1835544..1836689 (-) 1146 WP_011276052.1 phage portal protein -
  SH_RS08670 (SH1775) - 1836709..1838370 (-) 1662 WP_011276053.1 terminase TerL endonuclease subunit -
  SH_RS08675 (SH1776) - 1838367..1838726 (-) 360 WP_011276054.1 hypothetical protein -
  SH_RS08680 (SH1777) - 1838938..1839264 (-) 327 WP_011276055.1 HNH endonuclease -
  SH_RS08685 (SH1778) - 1839382..1839825 (-) 444 WP_011276056.1 hypothetical protein -
  SH_RS08690 (SH1779) - 1839839..1841206 (-) 1368 WP_148233665.1 SNF2-related protein -
  SH_RS08695 (SH1780) - 1841199..1841477 (-) 279 WP_011276058.1 VRR-NUC domain-containing protein -
  SH_RS08700 (SH1781) - 1841834..1844281 (-) 2448 WP_011276059.1 virulence-associated E family protein -
  SH_RS13670 (SH1782) - 1844296..1844433 (-) 138 WP_011276060.1 DUF1514 family protein -
  SH_RS14070 (SH1783) rinB 1844433..1844672 (-) 240 WP_011276061.1 transcriptional activator RinB -
  SH_RS08710 (SH1784) - 1844678..1844887 (-) 210 WP_011276062.1 hypothetical protein -
  SH_RS08715 (SH1785) - 1844893..1845117 (-) 225 WP_011276063.1 DUF1381 domain-containing protein -
  SH_RS08720 (SH1786) - 1845117..1845335 (-) 219 WP_011276064.1 hypothetical protein -
  SH_RS13675 (SH1787) - 1845342..1845500 (-) 159 WP_011276065.1 hypothetical protein -
  SH_RS08725 (SH1788) - 1845537..1845851 (-) 315 WP_011276066.1 MazG-like family protein -
  SH_RS08730 (SH1789) - 1845852..1846334 (-) 483 WP_041615175.1 hypothetical protein -
  SH_RS08735 (SH1790) - 1846334..1846573 (-) 240 WP_011276068.1 hypothetical protein -
  SH_RS08745 (SH1791) - 1846590..1847222 (-) 633 WP_011276069.1 putative HNHc nuclease -
  SH_RS08750 (SH1792) ssbA 1847237..1847665 (-) 429 WP_011276070.1 single-stranded DNA-binding protein Machinery gene
  SH_RS08755 (SH1793) - 1847662..1848327 (-) 666 WP_041615177.1 ERF family protein -
  SH_RS08760 (SH1794) - 1848320..1848547 (-) 228 WP_041615179.1 DUF2483 family protein -
  SH_RS08765 (SH1795) - 1848519..1848794 (-) 276 WP_011276073.1 hypothetical protein -
  SH_RS13680 (SH1796) - 1848879..1849049 (-) 171 WP_011276074.1 hypothetical protein -
  SH_RS08770 (SH1797) - 1849052..1849369 (-) 318 WP_011276075.1 DUF771 domain-containing protein -
  SH_RS13790 (SH1798) - 1849429..1849605 (+) 177 WP_011276076.1 hypothetical protein -
  SH_RS08775 (SH1799) - 1849767..1850306 (-) 540 WP_011276077.1 ORF6C domain-containing protein -
  SH_RS08780 (SH1800) - 1850299..1851225 (-) 927 WP_011276078.1 DUF3102 domain-containing protein -
  SH_RS08785 (SH1801) - 1851272..1851511 (+) 240 WP_011276079.1 hypothetical protein -
  SH_RS08790 (SH1803) - 1851688..1852479 (-) 792 WP_011276081.1 phage antirepressor Ant -
  SH_RS08795 (SH1804) - 1852479..1852673 (-) 195 WP_009382133.1 helix-turn-helix domain-containing protein -
  SH_RS08800 (SH1805) - 1852953..1853291 (+) 339 WP_011276082.1 helix-turn-helix domain-containing protein -
  SH_RS08805 (SH1806) - 1853305..1853976 (+) 672 WP_011276083.1 ImmA/IrrE family metallo-endopeptidase -
  SH_RS08810 (SH1807) - 1854058..1854585 (+) 528 WP_011276084.1 Ltp family lipoprotein -
  SH_RS08815 (SH1808) - 1854643..1855668 (+) 1026 WP_011276085.1 tyrosine-type recombinase/integrase -
  SH_RS08820 (SH1809) - 1856165..1856674 (-) 510 WP_011276086.1 YfcE family phosphodiesterase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15904.54 Da        Isoelectric Point: 6.3758

>NTDB_id=24417 SH_RS08750 WP_011276070.1 1847237..1847665(-) (ssbA) [Staphylococcus haemolyticus JCSC1435]
MINRVILVGRLTKDPEFRTTQSGVNVATFTLAVNRTFTNAQGEREADFINIVVFRKQADNVNNYLKKGNLADVDGRIQSR
SYENKEGQRVFVTEVVADSVQFLEPKNNNQQNSQPQQQRGQAQSGNNPFGNGPDISEDSLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=24417 SH_RS08750 WP_011276070.1 1847237..1847665(-) (ssbA) [Staphylococcus haemolyticus JCSC1435]
ATGATAAACAGAGTAATTTTAGTAGGTAGATTAACGAAAGATCCAGAATTCAGAACAACACAAAGCGGTGTGAATGTTGC
CACTTTCACACTAGCGGTCAATCGTACATTCACAAACGCACAAGGTGAACGCGAGGCTGATTTCATTAACATTGTAGTGT
TCAGAAAACAAGCTGATAACGTCAATAATTATTTGAAGAAAGGTAATTTAGCTGACGTAGACGGTCGTATTCAATCACGT
AGCTATGAAAACAAAGAAGGCCAACGTGTATTCGTAACAGAAGTAGTAGCAGACAGTGTTCAATTCTTAGAGCCAAAGAA
TAACAATCAACAAAACAGTCAACCTCAACAGCAACGAGGACAAGCACAAAGTGGTAACAATCCATTTGGTAATGGTCCAG
ATATCTCAGAAGATTCATTGCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4L5H4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.613
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

74.648

0.444
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.278

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

40.278

100

0.408
  ssbB/cilA Streptococcus pneumoniae Rx1

39.583

100

0.401
  ssbB/cilA Streptococcus pneumoniae D39

39.583

100

0.401
  ssbB/cilA Streptococcus pneumoniae R6

39.583

100

0.401
  ssbB/cilA Streptococcus mitis SK321

39.583

100

0.401
  ssbA Streptococcus mutans UA159

38.194

100

0.387
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.057

74.648

0.366

Multiple sequence alignment