Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CJ010_RS19955 Genome accession   NZ_CP022958
Coordinates   4327573..4328808 (+) Length   411 a.a.
NCBI ID   WP_141019672.1    Uniprot ID   A0A4Y6KWK9
Organism   Azoarcus sp. DD4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4322573..4333808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ010_RS19935 (CJ010_19880) - 4322718..4323500 (-) 783 WP_141019669.1 EI24 domain-containing protein -
  CJ010_RS19940 (CJ010_19885) ffh 4323503..4324861 (-) 1359 WP_141019670.1 signal recognition particle protein -
  CJ010_RS19945 (CJ010_19890) - 4324913..4325740 (+) 828 WP_141020791.1 inner membrane protein YpjD -
  CJ010_RS19950 (CJ010_19895) pilB 4325834..4327549 (+) 1716 WP_141019671.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CJ010_RS19955 (CJ010_19900) pilC 4327573..4328808 (+) 1236 WP_141019672.1 type II secretion system F family protein Machinery gene
  CJ010_RS19960 (CJ010_19905) pilD 4328855..4329706 (+) 852 WP_141019673.1 A24 family peptidase Machinery gene
  CJ010_RS19965 (CJ010_19910) - 4329863..4330123 (+) 261 WP_141019674.1 FmdB family zinc ribbon protein -
  CJ010_RS19970 (CJ010_19915) - 4330136..4330762 (+) 627 WP_141019675.1 DUF502 domain-containing protein -
  CJ010_RS19975 (CJ010_19920) aspS 4330822..4332621 (+) 1800 WP_141019676.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44480.31 Da        Isoelectric Point: 9.7073

>NTDB_id=243723 CJ010_RS19955 WP_141019672.1 4327573..4328808(+) (pilC) [Azoarcus sp. DD4]
MATAARAPQRTTTGPKEDLYNWEGKDKTGKIVRGEMRATGDTVVQATLRRQGVTVTKVRKQKLSRGHKITDKDIALFTRQ
LATMMKAGVPLLQAFDIGIKGSGNPSLARLLNEVRTDVETGSSLSQAFSKHPLYFDKLFCNLVGAGEQAGILDSLLDRIA
TYKEKILAIKGKIKSALFYPIAVVVVAALVVAVMMLFVIPEFKNVFTSFGADLPAPTLMVIAMSDFFTEYWYLIFGSIIG
IIVGISFIYKRSAAMQIAVDRIVLKLPVIGDVIRKATVARWARTLSTMFAAGVPLVEALDSVGGAAGNYIYLTATKQIQN
EVSTGTSLTVAMQNTSVFPTMVVQMVSIGEESGQLDSMLAKVADFYEQEVDEAVAGLSQLLEPLIMVFLGTVIGGLVVAM
YLPIFKLGSVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=243723 CJ010_RS19955 WP_141019672.1 4327573..4328808(+) (pilC) [Azoarcus sp. DD4]
ATGGCGACAGCAGCCCGCGCCCCTCAGCGCACGACGACCGGCCCGAAGGAAGACCTCTACAACTGGGAGGGCAAGGACAA
GACCGGCAAGATCGTCCGCGGCGAAATGCGCGCGACGGGCGACACCGTCGTCCAGGCCACCCTGCGCCGCCAGGGCGTCA
CGGTCACCAAGGTGAGGAAGCAGAAGCTGTCCCGCGGCCACAAGATCACCGACAAGGACATCGCGCTCTTCACGCGCCAG
CTTGCCACGATGATGAAAGCCGGCGTGCCGCTCCTGCAGGCTTTCGACATCGGCATCAAGGGGTCGGGCAACCCCAGCCT
GGCGCGCCTGCTGAACGAAGTGCGCACCGACGTGGAGACCGGCTCAAGCCTGTCGCAGGCCTTCAGCAAACACCCGCTGT
ATTTCGACAAGCTTTTCTGCAACCTGGTCGGCGCGGGCGAACAGGCCGGTATTCTCGACAGCCTGCTCGACCGCATCGCC
ACGTACAAGGAAAAGATCCTCGCCATCAAGGGCAAGATCAAGTCGGCGCTGTTCTATCCGATCGCGGTCGTCGTCGTCGC
GGCGCTTGTCGTCGCGGTCATGATGCTGTTCGTGATCCCCGAGTTCAAGAACGTATTCACCAGTTTCGGCGCAGACCTTC
CTGCCCCGACGCTCATGGTGATCGCGATGTCCGACTTCTTCACCGAATACTGGTACCTCATATTCGGCTCCATCATCGGC
ATCATCGTCGGCATCTCCTTCATCTACAAACGCTCGGCGGCAATGCAGATCGCGGTGGACCGCATCGTCCTGAAGCTTCC
GGTCATCGGCGACGTGATCCGCAAGGCGACGGTCGCGCGCTGGGCTCGCACCCTGTCCACGATGTTCGCGGCAGGGGTTC
CGCTGGTCGAAGCGCTCGACTCCGTTGGCGGCGCAGCAGGCAACTACATCTACCTCACCGCGACCAAACAGATCCAGAAC
GAGGTCAGCACCGGCACCAGCCTGACGGTGGCCATGCAGAACACCAGCGTGTTCCCCACCATGGTTGTGCAGATGGTTTC
CATCGGCGAGGAGTCGGGCCAGCTCGATTCCATGCTCGCCAAGGTTGCCGATTTCTACGAACAGGAAGTGGATGAAGCGG
TTGCCGGCCTATCCCAACTGCTCGAACCCCTCATCATGGTCTTCCTCGGCACCGTCATCGGCGGTCTGGTCGTCGCCATG
TACCTGCCGATCTTCAAGCTCGGCTCCGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6KWK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.523

96.837

0.528
  pilC Pseudomonas stutzeri DSM 10701

52.13

97.08

0.506
  pilG Neisseria gonorrhoeae MS11

51.385

96.594

0.496
  pilG Neisseria meningitidis 44/76-A

50.882

96.594

0.491
  pilC Acinetobacter baylyi ADP1

48.293

99.757

0.482
  pilC Acinetobacter baumannii D1279779

49.118

96.594

0.474
  pilC Vibrio cholerae strain A1552

42.222

98.54

0.416
  pilC Thermus thermophilus HB27

39.329

100

0.399
  pilC Vibrio campbellii strain DS40M4

40.494

98.54

0.399

Multiple sequence alignment