Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   VF_RS11905 Genome accession   NC_006840
Coordinates   2575651..2577339 (-) Length   562 a.a.
NCBI ID   WP_047863557.1    Uniprot ID   -
Organism   Aliivibrio fischeri ES114     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2570651..2582339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS11885 (VF2289) dam 2571338..2572168 (-) 831 WP_011262697.1 adenine-specific DNA-methyltransferase -
  VF_RS11890 (VF2290) - 2572251..2573774 (-) 1524 WP_011262698.1 SPOR domain-containing protein -
  VF_RS11895 (VF2291) aroB 2573783..2574871 (-) 1089 WP_011262699.1 3-dehydroquinate synthase -
  VF_RS11900 (VF2292) aroK 2574908..2575426 (-) 519 WP_005421091.1 shikimate kinase AroK -
  VF_RS11905 (VF2293) pilQ 2575651..2577339 (-) 1689 WP_047863557.1 type IV pilus secretin PilQ Machinery gene
  VF_RS11910 (VF2294) pilP 2577426..2577944 (-) 519 WP_011262701.1 pilus assembly protein PilP Machinery gene
  VF_RS11915 (VF2295) pilO 2577937..2578515 (-) 579 WP_011262702.1 type 4a pilus biogenesis protein PilO Machinery gene
  VF_RS11920 (VF2296) - 2578515..2579081 (-) 567 WP_011262703.1 PilN domain-containing protein -
  VF_RS11925 (VF2297) pilM 2579066..2580067 (-) 1002 WP_011262704.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 60837.31 Da        Isoelectric Point: 4.3664

>NTDB_id=24268 VF_RS11905 WP_047863557.1 2575651..2577339(-) (pilQ) [Aliivibrio fischeri ES114]
MFSFVHLNAIAEESVMNQLVEVDFQLSKKKEGVITVELASAAATVDLRKEKDKLIIELHDTKVSDDKLVILDVEDFATLV
SRIETFREPSSTVLSVDVKGDYQYDYFLKGPSLQVVVSQLPESEKKSPISSNNEDKSKPISINFQDIPVRHVLQLIADYN
DFNLVVADSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVEGNVVLIAPKTELDAQEQQVLEQAQMASELAALSSEILSI
KYAKASDIAELLVGEGEITMLSSRGSITVDERTNSLLLRDLPENITVIKDIIDTLDIPIKQVQIEARIVTVNEGNLDELG
VRWGITNTNGSTTVGGSIESNLAAVGLYDGGGSDDKKSGNNSLPVDDFLNVNLGLANPAASSIAFQVAKLGSDLLLDLEL
SALQAESKAEIISSPRLITTNKKPAYIEQGTEIPYLEASSSGATSVSFKKAVLSLMVTPQITPDNRLVLDLTVTQDRPGQ
VVKTGTGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKVPVLGDLPLLGALFRRSSENIGKKELLIFVTPKVV
IQ

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=24268 VF_RS11905 WP_047863557.1 2575651..2577339(-) (pilQ) [Aliivibrio fischeri ES114]
ATGTTCAGTTTCGTTCATTTGAATGCCATTGCTGAAGAGTCAGTGATGAATCAACTTGTTGAAGTAGATTTTCAACTAAG
TAAGAAAAAAGAAGGTGTCATAACAGTAGAGCTAGCTTCTGCTGCTGCGACGGTGGATTTACGTAAAGAAAAAGATAAGT
TGATTATTGAATTGCATGACACCAAAGTCAGCGATGATAAATTGGTTATCTTAGATGTTGAAGATTTTGCCACTCTTGTT
TCTCGTATTGAAACATTTAGAGAGCCAAGTAGTACCGTTTTATCTGTTGATGTTAAAGGTGACTATCAATATGACTACTT
CCTGAAAGGACCTTCCTTACAAGTGGTGGTATCTCAATTGCCAGAGAGTGAGAAAAAATCGCCGATTAGCTCCAATAATG
AAGATAAAAGTAAGCCTATTTCGATTAACTTCCAAGATATTCCAGTTCGTCATGTATTGCAGCTGATCGCGGATTATAAT
GATTTTAACTTGGTTGTTGCTGACTCTGTTACGGGGAATTTAACCTTACGTCTGGATGGTGTGCCATGGCAGCAAGTGCT
TGATATTATTCTTCAAGTTAAAGGGTTAGATAAACGTGTCGAGGGTAATGTTGTTTTGATCGCACCCAAAACAGAGCTTG
ATGCACAAGAGCAGCAAGTATTAGAGCAAGCTCAAATGGCATCTGAGCTGGCTGCGCTATCATCTGAGATCCTTTCTATT
AAATACGCTAAAGCGTCAGATATTGCAGAGCTGCTTGTTGGTGAAGGTGAAATTACCATGTTATCTAGCCGTGGCAGTAT
CACGGTAGATGAGCGTACAAACTCTTTATTGTTAAGAGATCTTCCAGAGAACATTACGGTAATTAAAGACATCATTGATA
CGTTAGATATTCCAATTAAACAGGTTCAAATTGAAGCTCGTATTGTAACGGTCAATGAAGGTAACTTAGATGAGTTAGGG
GTTCGTTGGGGGATAACGAATACCAATGGCAGTACAACGGTTGGTGGTTCTATAGAGAGCAATTTAGCCGCTGTGGGGTT
GTATGATGGTGGTGGAAGTGATGATAAGAAGAGTGGCAATAATAGTCTTCCTGTCGATGATTTCTTAAATGTGAATCTAG
GATTAGCGAATCCTGCCGCTTCAAGTATTGCTTTTCAGGTAGCGAAATTAGGCTCTGATTTATTGCTTGATTTAGAACTT
TCGGCACTTCAAGCTGAATCTAAGGCTGAGATTATCTCTAGTCCACGTTTGATTACCACCAATAAGAAACCTGCGTATAT
TGAACAAGGTACAGAGATCCCTTACTTAGAGGCTTCATCCAGTGGGGCAACATCCGTTTCATTTAAAAAAGCGGTATTAA
GCTTAATGGTGACGCCACAAATTACGCCTGATAATCGATTAGTTTTAGACTTAACGGTAACACAAGATAGACCGGGGCAA
GTGGTTAAAACAGGTACCGGTGAAGCCGTAGCGATTGATACACAACGTATTGGAACCCAAGTTTTGGTAGATAATGGGGA
AACGGTTGTTTTAGGTGGTATTTATCAACACTCGTTATCAAATAGCGTTGAGAAAGTGCCAGTTCTTGGTGACTTACCGT
TACTTGGAGCGTTATTTCGTCGAAGCTCTGAAAATATAGGTAAAAAAGAATTATTGATATTCGTTACGCCAAAAGTTGTT
ATACAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(402-560)

Bacterial type II/III secretion system short domain (Secretin_N)

(236-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

71.196

98.221

0.699
  pilQ Vibrio cholerae strain A1552

70.109

98.221

0.689
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

70.109

98.221

0.689
  comQ Acinetobacter baylyi ADP1

39.859

100

0.402
  pilQ Pseudomonas aeruginosa PAK

40.727

97.865

0.399
  pilQ Acinetobacter baumannii D1279779

38.515

100

0.397
  pilQ Acinetobacter baumannii strain A118

38.448

100

0.397
  pilQ Legionella pneumophila strain ERS1305867

39.455

97.865

0.386
  pilQ Legionella pneumophila strain Lp02

39.455

97.865

0.386

Multiple sequence alignment