Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   VF_RS11910 Genome accession   NC_006840
Coordinates   2577426..2577944 (-) Length   172 a.a.
NCBI ID   WP_011262701.1    Uniprot ID   Q5E2F7
Organism   Aliivibrio fischeri ES114     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2572426..2582944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS11895 (VF2291) aroB 2573783..2574871 (-) 1089 WP_011262699.1 3-dehydroquinate synthase -
  VF_RS11900 (VF2292) aroK 2574908..2575426 (-) 519 WP_005421091.1 shikimate kinase AroK -
  VF_RS11905 (VF2293) pilQ 2575651..2577339 (-) 1689 WP_047863557.1 type IV pilus secretin PilQ Machinery gene
  VF_RS11910 (VF2294) pilP 2577426..2577944 (-) 519 WP_011262701.1 pilus assembly protein PilP Machinery gene
  VF_RS11915 (VF2295) pilO 2577937..2578515 (-) 579 WP_011262702.1 type 4a pilus biogenesis protein PilO Machinery gene
  VF_RS11920 (VF2296) - 2578515..2579081 (-) 567 WP_011262703.1 PilN domain-containing protein -
  VF_RS11925 (VF2297) pilM 2579066..2580067 (-) 1002 WP_011262704.1 type IV pilus biogenesis protein PilM -
  VF_RS11930 (VF2298) - 2580202..2582700 (+) 2499 WP_011262705.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19445.84 Da        Isoelectric Point: 10.7217

>NTDB_id=24269 VF_RS11910 WP_011262701.1 2577426..2577944(-) (pilP) [Aliivibrio fischeri ES114]
MNSRMFVSAITLTLMVGCKANKDSLNTFYTDAKRSGHKEVEVLANVVPFEVEVYAQSEARSPFVLPKQPERVTQPKKKKT
CWQPKYRKKTGALERYSLRKLRLKGVMGADQDITALIQTPKGSVIKVRKGQYMGTNNGQVVAIKSKQITLKETLPDGMGC
WQQRYVKLALKH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=24269 VF_RS11910 WP_011262701.1 2577426..2577944(-) (pilP) [Aliivibrio fischeri ES114]
ATGAATAGTCGGATGTTTGTTTCAGCCATAACCTTGACGTTGATGGTTGGGTGTAAAGCGAATAAGGACTCTCTTAATAC
TTTTTATACTGATGCTAAACGATCGGGACATAAAGAGGTGGAAGTATTAGCTAACGTTGTACCTTTTGAGGTGGAAGTGT
ATGCCCAATCAGAAGCACGCTCCCCCTTTGTTCTTCCGAAGCAACCTGAACGGGTAACCCAACCGAAAAAGAAAAAAACG
TGTTGGCAGCCGAAATACAGAAAAAAAACGGGAGCATTAGAGCGATATTCATTGCGTAAGTTACGTTTAAAAGGCGTGAT
GGGAGCAGACCAAGACATTACCGCTCTGATACAAACACCTAAAGGGAGTGTGATTAAAGTTCGCAAAGGGCAGTACATGG
GGACCAACAATGGTCAAGTGGTTGCGATTAAATCAAAACAAATTACGTTGAAAGAAACCCTGCCAGATGGAATGGGATGC
TGGCAACAAAGATATGTAAAACTGGCGTTGAAACATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E2F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

49.412

98.837

0.488
  pilP Vibrio campbellii strain DS40M4

42.105

99.419

0.419

Multiple sequence alignment