Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | VF_RS11375 | Genome accession | NC_006840 |
| Coordinates | 2456516..2456920 (+) | Length | 134 a.a. |
| NCBI ID | WP_011262622.1 | Uniprot ID | Q5E2R6 |
| Organism | Aliivibrio fischeri ES114 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2451516..2461920
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VF_RS11360 (VF2182) | pdhR | 2453565..2454335 (-) | 771 | WP_005420885.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| VF_RS11365 (VF2183) | ampD | 2454622..2455173 (-) | 552 | WP_011262620.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| VF_RS11370 (VF2184) | nadC | 2455287..2456174 (+) | 888 | WP_005420889.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| VF_RS11375 (VF2185) | pilA | 2456516..2456920 (+) | 405 | WP_011262622.1 | pilin | Machinery gene |
| VF_RS11380 (VF2186) | pilB | 2456927..2458615 (+) | 1689 | WP_011262623.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VF_RS11385 (VF2187) | pilC | 2458635..2459873 (+) | 1239 | WP_011262624.1 | type II secretion system F family protein | Machinery gene |
| VF_RS11390 (VF2188) | pilD | 2459978..2460865 (+) | 888 | WP_011262625.1 | prepilin peptidase | Machinery gene |
| VF_RS11395 (VF2189) | coaE | 2460862..2461484 (+) | 623 | Protein_2204 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13938.92 Da Isoelectric Point: 6.9463
>NTDB_id=24262 VF_RS11375 WP_011262622.1 2456516..2456920(+) (pilA) [Aliivibrio fischeri ES114]
MKKRQGQKGFTLIELMIVVAVIGVLSAIAIPKYQEFAKKGAVASGIATLSALKTNVEDHMATNGSFPANITDIGAIDSSI
GVVAFDGTVSNGIKITFNDGAVSGSTVTISRQDTGKWDCQYSVSDLNIPGCQGQ
MKKRQGQKGFTLIELMIVVAVIGVLSAIAIPKYQEFAKKGAVASGIATLSALKTNVEDHMATNGSFPANITDIGAIDSSI
GVVAFDGTVSNGIKITFNDGAVSGSTVTISRQDTGKWDCQYSVSDLNIPGCQGQ
Nucleotide
Download Length: 405 bp
>NTDB_id=24262 VF_RS11375 WP_011262622.1 2456516..2456920(+) (pilA) [Aliivibrio fischeri ES114]
ATGAAAAAGCGTCAAGGACAGAAAGGTTTTACCCTAATTGAATTAATGATTGTAGTTGCCGTAATTGGTGTGTTATCAGC
AATTGCGATTCCTAAATATCAAGAGTTTGCTAAAAAAGGAGCTGTCGCTTCTGGTATTGCAACTCTTTCGGCACTAAAAA
CAAATGTCGAAGACCATATGGCTACCAACGGCTCTTTTCCTGCCAATATTACTGACATTGGAGCTATTGATTCTAGCATT
GGTGTAGTCGCTTTTGATGGAACTGTAAGTAATGGAATTAAAATAACGTTCAATGATGGGGCAGTGAGTGGCTCAACAGT
GACCATATCTCGTCAAGACACTGGAAAATGGGATTGTCAATATTCTGTAAGTGATTTAAATATCCCAGGCTGTCAAGGCC
AATAA
ATGAAAAAGCGTCAAGGACAGAAAGGTTTTACCCTAATTGAATTAATGATTGTAGTTGCCGTAATTGGTGTGTTATCAGC
AATTGCGATTCCTAAATATCAAGAGTTTGCTAAAAAAGGAGCTGTCGCTTCTGGTATTGCAACTCTTTCGGCACTAAAAA
CAAATGTCGAAGACCATATGGCTACCAACGGCTCTTTTCCTGCCAATATTACTGACATTGGAGCTATTGATTCTAGCATT
GGTGTAGTCGCTTTTGATGGAACTGTAAGTAATGGAATTAAAATAACGTTCAATGATGGGGCAGTGAGTGGCTCAACAGT
GACCATATCTCGTCAAGACACTGGAAAATGGGATTGTCAATATTCTGTAAGTGATTTAAATATCCCAGGCTGTCAAGGCC
AATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.479 |
100 |
0.493 |
| pilA | Vibrio cholerae strain A1552 |
46.479 |
100 |
0.493 |
| pilA | Vibrio cholerae C6706 |
46.479 |
100 |
0.493 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
38.571 |
100 |
0.403 |
| pilA | Pseudomonas aeruginosa PAK |
35.333 |
100 |
0.396 |
| pilA | Acinetobacter baumannii strain A118 |
38.519 |
100 |
0.388 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
37.778 |
100 |
0.381 |