Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VF_RS11385 Genome accession   NC_006840
Coordinates   2458635..2459873 (+) Length   412 a.a.
NCBI ID   WP_011262624.1    Uniprot ID   Q5E2R4
Organism   Aliivibrio fischeri ES114     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2453635..2464873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS11365 (VF2183) ampD 2454622..2455173 (-) 552 WP_011262620.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VF_RS11370 (VF2184) nadC 2455287..2456174 (+) 888 WP_005420889.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VF_RS11375 (VF2185) pilA 2456516..2456920 (+) 405 WP_011262622.1 pilin Machinery gene
  VF_RS11380 (VF2186) pilB 2456927..2458615 (+) 1689 WP_011262623.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VF_RS11385 (VF2187) pilC 2458635..2459873 (+) 1239 WP_011262624.1 type II secretion system F family protein Machinery gene
  VF_RS11390 (VF2188) pilD 2459978..2460865 (+) 888 WP_011262625.1 prepilin peptidase Machinery gene
  VF_RS11395 (VF2189) coaE 2460862..2461484 (+) 623 Protein_2204 dephospho-CoA kinase -
  VF_RS11400 (VF2190) zapD 2461490..2462236 (+) 747 WP_005420900.1 cell division protein ZapD -
  VF_RS11405 (VF2191) yacG 2462244..2462453 (+) 210 WP_011262627.1 DNA gyrase inhibitor YacG -
  VF_RS11410 (VF2192) mutT 2462523..2462924 (-) 402 WP_011262628.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45987.36 Da        Isoelectric Point: 10.1378

>NTDB_id=24264 VF_RS11385 WP_011262624.1 2458635..2459873(+) (pilC) [Aliivibrio fischeri ES114]
MPKTKKKSKAVVLKSFQWRGINSSGKKVSGKQLALSDAEVRTKLTEQNIQIKKIKKRSISSFEKMKHAVKRKDITLFTRQ
LSTMLASGVPVVQSLHLIAENNTKAEMKSILHQVCLSIEAGTQLSKALSTSCSHFDSFYIDLIATGEETGSLAQAFARLA
EYREKSDALRSKVIKAMIYPTMVFLVAITVTILMLTFVIPEFENIFKGFGAELPWFTQQVINISHNLQEYGLYILLLIML
TILMLSALKKKSYFFRMKVSRHSLQIPIIGTVLSKAAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQ
HTAAGMPLYIAMRHTEVFPEMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLGTMIGGLVVSM
YLPIFNLMSVIG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=24264 VF_RS11385 WP_011262624.1 2458635..2459873(+) (pilC) [Aliivibrio fischeri ES114]
ATGCCTAAAACAAAAAAGAAATCCAAAGCAGTCGTATTAAAAAGCTTTCAATGGCGTGGCATTAACAGTTCAGGGAAAAA
AGTATCTGGAAAACAGCTCGCGTTAAGTGATGCTGAAGTCAGAACAAAATTAACTGAACAAAATATCCAGATTAAAAAAA
TTAAAAAGCGTAGTATTTCTAGCTTTGAAAAAATGAAGCACGCGGTTAAGCGAAAAGACATCACCCTCTTTACTCGCCAG
CTTTCTACCATGCTCGCCTCAGGTGTTCCAGTTGTTCAGTCACTGCACCTCATCGCAGAAAACAACACTAAAGCGGAAAT
GAAATCCATTTTGCATCAAGTTTGCTTATCCATCGAAGCAGGTACTCAATTATCTAAAGCGCTCTCTACCAGTTGTTCTC
ATTTTGATTCTTTTTATATCGACCTTATAGCGACTGGTGAAGAGACAGGCAGCTTAGCTCAGGCATTCGCTCGCTTGGCA
GAGTATAGGGAAAAAAGTGATGCTTTGCGTTCCAAAGTAATCAAAGCCATGATTTATCCAACCATGGTTTTTTTAGTTGC
GATAACCGTAACTATTTTAATGCTTACTTTTGTTATCCCAGAATTTGAGAATATTTTTAAAGGCTTTGGCGCTGAATTAC
CTTGGTTTACTCAACAGGTAATTAATATCTCTCATAACTTACAAGAGTATGGTCTATATATTCTTTTACTTATTATGCTC
ACTATCCTAATGCTCAGTGCATTAAAGAAGAAATCTTACTTTTTTAGAATGAAAGTGAGTCGTCATAGCTTACAAATTCC
CATCATTGGTACCGTGCTGTCTAAAGCTGCCATTGCCAAATTTTCCCGTACCTTAGCAACCAGTTTTAGCTCAGGTTTGC
CGATTTTACACAGCTTACAAACCACCAGTAAAACCGCCGGTAATCTTTACTATCAAGAAGCCATCTTATCTGTACAACAG
CACACCGCTGCAGGTATGCCCCTTTATATTGCTATGCGACATACCGAAGTTTTTCCTGAAATGGTATTGCAAATGGTCAT
GATTGGAGAAGAATCAGGAAAGCTAGATGACATGCTAAATAAAATTGCTCATGTTTATGAGGAAGATGTTGATAATACCG
TAGATAACTTAGGTAAAATTCTAGAGCCTTTTATTATCGTTTTTCTTGGTACCATGATTGGTGGTTTAGTGGTGTCTATG
TATCTTCCAATCTTTAACCTTATGAGTGTTATTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E2R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

64.619

98.786

0.638
  pilC Vibrio campbellii strain DS40M4

63.3

98.544

0.624
  pilC Acinetobacter baylyi ADP1

40.594

98.058

0.398
  pilG Neisseria gonorrhoeae MS11

40.351

96.845

0.391
  pilC Acinetobacter baumannii D1279779

39.851

98.058

0.391
  pilG Neisseria meningitidis 44/76-A

40.1

96.845

0.388
  pilC Pseudomonas stutzeri DSM 10701

39.206

97.816

0.383
  pilC Legionella pneumophila strain ERS1305867

39.348

96.845

0.381

Multiple sequence alignment