Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CCZ37_RS11710 Genome accession   NZ_CP022741
Coordinates   2515164..2516894 (-) Length   576 a.a.
NCBI ID   WP_094500581.1    Uniprot ID   -
Organism   Vibrio qinghaiensis strain Q67     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2510164..2521894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS11690 (CCZ37_11675) - 2510898..2511728 (-) 831 WP_088729178.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  CCZ37_RS11695 (CCZ37_11680) - 2511798..2513294 (-) 1497 WP_094500579.1 AAA family ATPase -
  CCZ37_RS11700 (CCZ37_11685) aroB 2513343..2514431 (-) 1089 WP_094500580.1 3-dehydroquinate synthase -
  CCZ37_RS11705 (CCZ37_11690) aroK 2514456..2514977 (-) 522 WP_010317691.1 shikimate kinase AroK -
  CCZ37_RS11710 (CCZ37_11695) pilQ 2515164..2516894 (-) 1731 WP_094500581.1 type IV pilus secretin PilQ family protein Machinery gene
  CCZ37_RS11715 (CCZ37_11700) pilP 2516918..2517439 (-) 522 WP_010317687.1 pilus assembly protein PilP Machinery gene
  CCZ37_RS11720 (CCZ37_11705) pilO 2517426..2518019 (-) 594 WP_094500582.1 type 4a pilus biogenesis protein PilO Machinery gene
  CCZ37_RS11725 (CCZ37_11710) pilN 2518012..2518614 (-) 603 WP_094500583.1 PilN domain-containing protein Machinery gene
  CCZ37_RS11730 (CCZ37_11715) pilM 2518604..2519614 (-) 1011 WP_094500584.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 62839.33 Da        Isoelectric Point: 4.8754

>NTDB_id=242072 CCZ37_RS11710 WP_094500581.1 2515164..2516894(-) (pilQ) [Vibrio qinghaiensis strain Q67]
MIKGRQTQMTMVFRSLLFGLLLSVAGLSVAGVSVATETAQTNELKGIDFRVNKNKDAVLIVELASPSTVVNVQKVADGLQ
IELLKTDVSNEKLYVLDVKDFATVVESIEVLRKEPSTQLLATIHGEFKYDYSLKGKYLEVVIGKLKEQEKPKPKSILEKE
GKLISINFQDIPVRNVLQLIADYNAFNLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEEMDLR
EKQQLEKARLAEELGDLRSEIIKINFAKASDIAQMIGGEGAVSMLSERGSISIDERTNSLLIRELAENIVVIRQIVESLD
IPVKQVQIEARIVTVNEGNLDELGVRWGFTSTNGNNTVGGSIESNLFQVDKSGESTLPVDDFLNVNLAATSANASSIAFQ
VAKLGSDMLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVAFKKAVLSLKVTPQITPDNR
LVLDLSVTQDRPGDIVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVNNTVDKVPLLGDLPLLGALFRRSYEQV
GKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=242072 CCZ37_RS11710 WP_094500581.1 2515164..2516894(-) (pilQ) [Vibrio qinghaiensis strain Q67]
ATGATTAAAGGACGACAGACACAAATGACTATGGTATTTCGGAGCCTCTTATTTGGCTTATTATTGAGTGTTGCAGGGCT
AAGTGTTGCAGGGGTAAGTGTGGCGACAGAAACCGCGCAGACCAACGAGCTTAAAGGCATCGACTTTCGAGTCAATAAAA
ACAAAGATGCGGTATTGATTGTTGAACTCGCATCACCCTCGACGGTAGTTAATGTGCAGAAAGTGGCTGACGGTTTACAA
ATTGAACTGCTTAAGACGGATGTCTCCAATGAGAAACTGTATGTCTTGGATGTCAAAGATTTTGCAACCGTTGTTGAGAG
TATCGAGGTATTGCGCAAAGAGCCAAGTACACAGTTACTGGCGACCATTCATGGCGAGTTTAAGTATGATTACAGCTTGA
AAGGGAAATACCTTGAGGTGGTGATTGGCAAACTGAAAGAACAAGAAAAACCTAAGCCGAAGAGCATTCTTGAGAAAGAG
GGCAAGCTCATCTCGATTAATTTTCAAGATATTCCTGTGCGAAATGTTTTGCAGCTTATCGCAGATTATAACGCGTTTAA
CCTAGTCGTCTCAGATTCGGTCACTGGTAACTTGACGCTACGGCTTGATGGCGTGCCTTGGCAGCAAGTGCTCGATATCA
TTTTGCAAGTCAAGGGATTGGATAAGCGTGTTGACGGCAATGTGATTTTAGTGGCACCTAAAGAAGAGATGGATTTACGT
GAAAAGCAGCAACTTGAAAAGGCACGTTTGGCTGAAGAGTTGGGCGATCTTCGTTCTGAAATCATCAAAATTAATTTTGC
TAAGGCGTCTGATATTGCGCAGATGATTGGTGGTGAAGGGGCCGTTAGTATGTTGTCTGAGCGAGGTTCCATCAGTATCG
ACGAGCGAACCAACTCACTACTGATCCGCGAATTGGCGGAGAATATTGTGGTGATACGCCAAATTGTTGAATCACTCGAT
ATTCCGGTTAAACAGGTGCAAATTGAAGCGCGTATTGTTACGGTTAATGAAGGGAATTTGGATGAGCTTGGCGTACGCTG
GGGCTTTACCTCGACCAATGGCAACAACACCGTAGGCGGAAGTATTGAAAGTAATTTATTCCAAGTGGATAAGTCGGGAG
AAAGTACATTGCCCGTTGATGATTTCCTTAACGTAAACTTAGCAGCGACCTCCGCTAATGCCTCAAGTATTGCCTTCCAA
GTGGCTAAGTTGGGGTCGGATATGTTGTTGGATTTAGAGCTTTCAGCGCTGCAACGTGAGTCGAAAGCAGAGATCATTTC
CAGCCCTCGTTTGATCACGACCAACAAGAAACCCGCTTACATCGAGCAGGGTACGGAGATCCCTTATCTGGAGTCTTCTT
CCAGCGGCGCAACGACAGTCGCCTTCAAAAAAGCGGTGCTGAGTTTAAAAGTGACGCCGCAGATAACGCCGGATAATCGC
TTAGTGTTAGATCTCAGTGTCACTCAAGACCGGCCTGGGGATATTGTAAAAACAGGGACGGGAGAAGCGGTTGCAATTAA
TACTCAGCGTATTGGCACTCAAGTATTGGTCAATAATGGAGAAACCGTGGTCCTTGGTGGAATATTCCAACATAGCGTCA
ACAATACGGTGGATAAGGTGCCATTACTTGGTGATTTGCCATTACTTGGTGCATTGTTCCGCCGTTCCTATGAACAAGTA
GGCAAAAGTGAGCTGCTGATTTTCGTGACACCGAAAGTCGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(260-325)

Bacterial type II and III secretion system protein (Secretin)

(416-574)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

81.076

100

0.811
  pilQ Vibrio cholerae strain A1552

81.076

100

0.811
  pilQ Vibrio campbellii strain DS40M4

78.766

95.66

0.753
  pilQ Legionella pneumophila strain Lp02

42.222

93.75

0.396
  pilQ Legionella pneumophila strain ERS1305867

42.222

93.75

0.396
  comQ Acinetobacter baylyi ADP1

38.396

100

0.391
  pilQ Pseudomonas aeruginosa PAK

40.036

95.833

0.384
  pilQ Acinetobacter baumannii D1279779

36.489

100

0.368
  pilQ Acinetobacter baumannii strain A118

36.489

100

0.368

Multiple sequence alignment