Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | CCZ37_RS11725 | Genome accession | NZ_CP022741 |
| Coordinates | 2518012..2518614 (-) | Length | 200 a.a. |
| NCBI ID | WP_094500583.1 | Uniprot ID | A0A223N053 |
| Organism | Vibrio qinghaiensis strain Q67 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2513012..2523614
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCZ37_RS11700 (CCZ37_11685) | aroB | 2513343..2514431 (-) | 1089 | WP_094500580.1 | 3-dehydroquinate synthase | - |
| CCZ37_RS11705 (CCZ37_11690) | aroK | 2514456..2514977 (-) | 522 | WP_010317691.1 | shikimate kinase AroK | - |
| CCZ37_RS11710 (CCZ37_11695) | pilQ | 2515164..2516894 (-) | 1731 | WP_094500581.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CCZ37_RS11715 (CCZ37_11700) | pilP | 2516918..2517439 (-) | 522 | WP_010317687.1 | pilus assembly protein PilP | Machinery gene |
| CCZ37_RS11720 (CCZ37_11705) | pilO | 2517426..2518019 (-) | 594 | WP_094500582.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| CCZ37_RS11725 (CCZ37_11710) | pilN | 2518012..2518614 (-) | 603 | WP_094500583.1 | PilN domain-containing protein | Machinery gene |
| CCZ37_RS11730 (CCZ37_11715) | pilM | 2518604..2519614 (-) | 1011 | WP_094500584.1 | type IV pilus assembly protein PilM | Machinery gene |
| CCZ37_RS11735 (CCZ37_11720) | - | 2519764..2522262 (+) | 2499 | WP_010317677.1 | PBP1A family penicillin-binding protein | - |
| CCZ37_RS11740 (CCZ37_11725) | oxyR | 2522299..2523189 (-) | 891 | WP_094500585.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 200 a.a. Molecular weight: 22669.19 Da Isoelectric Point: 9.9178
>NTDB_id=242075 CCZ37_RS11725 WP_094500583.1 2518012..2518614(-) (pilN) [Vibrio qinghaiensis strain Q67]
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQQQESRLAYLNQYIQRLDKQINALKITEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKDFQTFKVSFMFHSPTPQGAALTKIRPTGAVHD
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQQQESRLAYLNQYIQRLDKQINALKITEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKDFQTFKVSFMFHSPTPQGAALTKIRPTGAVHD
Nucleotide
Download Length: 603 bp
>NTDB_id=242075 CCZ37_RS11725 WP_094500583.1 2518012..2518614(-) (pilN) [Vibrio qinghaiensis strain Q67]
ATGTTGCATAGCATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCGGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCACAGCAGCAAGAGTCTC
GTCTGGCTTATTTGAATCAATACATTCAGCGGCTTGATAAACAGATCAATGCATTAAAAATAACGGAACAAGAACACAAG
GCACTATTAACTCGCTTGTCGGTCGTCGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATCACCGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CATGGTAATAAGCGATTTGGTAAGGATTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCACAGGGCGC
TGCGCTAACCAAGATTCGGCCTACAGGAGCTGTTCATGACTAG
ATGTTGCATAGCATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCGGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCACAGCAGCAAGAGTCTC
GTCTGGCTTATTTGAATCAATACATTCAGCGGCTTGATAAACAGATCAATGCATTAAAAATAACGGAACAAGAACACAAG
GCACTATTAACTCGCTTGTCGGTCGTCGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATCACCGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CATGGTAATAAGCGATTTGGTAAGGATTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCACAGGGCGC
TGCGCTAACCAAGATTCGGCCTACAGGAGCTGTTCATGACTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
66.842 |
95 |
0.635 |
| pilN | Vibrio campbellii strain DS40M4 |
65.241 |
93.5 |
0.61 |