Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | CHF41_RS02785 | Genome accession | NZ_CP022680 |
| Coordinates | 544626..545024 (+) | Length | 132 a.a. |
| NCBI ID | WP_119875889.1 | Uniprot ID | - |
| Organism | Streptococcus respiraculi strain HTS25 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 543602..548509 | 544626..545024 | within | 0 |
Gene organization within MGE regions
Location: 543602..548509
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CHF41_RS02775 | - | 543602..543922 (+) | 321 | WP_119875887.1 | thioredoxin family protein | - |
| CHF41_RS02780 | ytpR | 543926..544555 (+) | 630 | WP_119875888.1 | YtpR family tRNA-binding protein | - |
| CHF41_RS02785 | ssbB | 544626..545024 (+) | 399 | WP_119875889.1 | single-stranded DNA-binding protein | Machinery gene |
| CHF41_RS02790 | groES | 545200..545484 (+) | 285 | WP_119875890.1 | co-chaperone GroES | - |
| CHF41_RS02795 | groL | 545502..547124 (+) | 1623 | WP_119875891.1 | chaperonin GroEL | - |
| CHF41_RS02800 | - | 547544..548509 (-) | 966 | WP_119875892.1 | DDE-type integrase/transposase/recombinase | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 14909.79 Da Isoelectric Point: 5.3058
>NTDB_id=241561 CHF41_RS02785 WP_119875889.1 544626..545024(+) (ssbB) [Streptococcus respiraculi strain HTS25]
MYNKVIMIGRLTTKPEVNQTASGKHVTRITVAVNRRFKTENGDREADFITAIFWGKLAETLASYGGKGSLVSIDGELRTR
KYEKNGQNQYVTEVLGQSFQLLESRAQRAIRENNIGEDLADLVLEDEEELPF
MYNKVIMIGRLTTKPEVNQTASGKHVTRITVAVNRRFKTENGDREADFITAIFWGKLAETLASYGGKGSLVSIDGELRTR
KYEKNGQNQYVTEVLGQSFQLLESRAQRAIRENNIGEDLADLVLEDEEELPF
Nucleotide
Download Length: 399 bp
>NTDB_id=241561 CHF41_RS02785 WP_119875889.1 544626..545024(+) (ssbB) [Streptococcus respiraculi strain HTS25]
ATGTATAATAAAGTCATTATGATCGGGCGTTTAACGACCAAACCTGAAGTAAACCAGACAGCAAGTGGCAAACATGTCAC
CCGCATCACGGTAGCCGTCAATCGGCGATTTAAAACTGAAAACGGTGATCGTGAAGCTGATTTCATCACAGCTATCTTTT
GGGGGAAATTAGCGGAGACCTTGGCTTCCTATGGAGGAAAAGGAAGCTTGGTTTCCATTGACGGCGAGTTGCGTACGCGG
AAATACGAAAAAAATGGTCAAAATCAATACGTGACAGAAGTTCTTGGCCAGTCCTTTCAATTGCTAGAAAGCCGTGCTCA
ACGTGCTATTCGAGAGAACAATATAGGAGAAGACTTAGCTGATTTAGTCTTAGAAGATGAAGAAGAACTACCGTTCTAG
ATGTATAATAAAGTCATTATGATCGGGCGTTTAACGACCAAACCTGAAGTAAACCAGACAGCAAGTGGCAAACATGTCAC
CCGCATCACGGTAGCCGTCAATCGGCGATTTAAAACTGAAAACGGTGATCGTGAAGCTGATTTCATCACAGCTATCTTTT
GGGGGAAATTAGCGGAGACCTTGGCTTCCTATGGAGGAAAAGGAAGCTTGGTTTCCATTGACGGCGAGTTGCGTACGCGG
AAATACGAAAAAAATGGTCAAAATCAATACGTGACAGAAGTTCTTGGCCAGTCCTTTCAATTGCTAGAAAGCCGTGCTCA
ACGTGCTATTCGAGAGAACAATATAGGAGAAGACTTAGCTGATTTAGTCTTAGAAGATGAAGAAGAACTACCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
72.727 |
100 |
0.727 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
71.97 |
100 |
0.72 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
71.97 |
100 |
0.72 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
71.97 |
100 |
0.72 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
71.97 |
100 |
0.72 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
71.212 |
100 |
0.712 |
| ssbB/cilA | Streptococcus mitis SK321 |
70.455 |
100 |
0.705 |
| ssbA | Streptococcus mutans UA159 |
69.697 |
100 |
0.697 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
58.772 |
86.364 |
0.508 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.887 |
80.303 |
0.417 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.17 |
80.303 |
0.379 |