Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CHF41_RS01325 | Genome accession | NZ_CP022680 |
| Coordinates | 273873..274295 (+) | Length | 140 a.a. |
| NCBI ID | WP_119875672.1 | Uniprot ID | - |
| Organism | Streptococcus respiraculi strain HTS25 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 261415..296200 | 273873..274295 | within | 0 |
Gene organization within MGE regions
Location: 261415..296200
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CHF41_RS01210 | secE | 261415..261591 (+) | 177 | WP_119875651.1 | preprotein translocase subunit SecE | - |
| CHF41_RS01215 | nusG | 261679..262218 (+) | 540 | WP_119875652.1 | transcription termination/antitermination protein NusG | - |
| CHF41_RS01220 | - | 262432..262707 (+) | 276 | WP_162911899.1 | DUF4298 domain-containing protein | - |
| CHF41_RS01225 | - | 262892..263320 (+) | 429 | WP_119875654.1 | MafB | - |
| CHF41_RS01230 | - | 263289..263489 (+) | 201 | WP_119875655.1 | hypothetical protein | - |
| CHF41_RS01235 | - | 263639..264721 (-) | 1083 | WP_119875656.1 | tyrosine-type recombinase/integrase | - |
| CHF41_RS01240 | - | 265010..266446 (-) | 1437 | WP_119875657.1 | ATP-binding protein | - |
| CHF41_RS01245 | - | 266459..267235 (-) | 777 | WP_119875658.1 | XRE family transcriptional regulator | - |
| CHF41_RS01255 | - | 267718..267924 (+) | 207 | WP_067087725.1 | helix-turn-helix domain-containing protein | - |
| CHF41_RS01260 | - | 267957..268682 (+) | 726 | WP_119875660.1 | NUMOD4 domain-containing protein | - |
| CHF41_RS01265 | - | 268783..268974 (+) | 192 | WP_067087730.1 | helix-turn-helix domain-containing protein | - |
| CHF41_RS10020 | - | 269087..269800 (-) | 714 | WP_162911900.1 | hypothetical protein | - |
| CHF41_RS10025 | - | 269838..269978 (+) | 141 | WP_162911901.1 | hypothetical protein | - |
| CHF41_RS01275 | - | 269998..270186 (+) | 189 | WP_119875662.1 | helix-turn-helix domain-containing protein | - |
| CHF41_RS01280 | - | 270221..270418 (+) | 198 | WP_119875663.1 | hypothetical protein | - |
| CHF41_RS10260 | - | 270432..270566 (+) | 135 | WP_276308854.1 | hypothetical protein | - |
| CHF41_RS01285 | - | 270563..270892 (+) | 330 | WP_119875664.1 | hypothetical protein | - |
| CHF41_RS01290 | - | 270967..271251 (+) | 285 | WP_119875665.1 | DNA-binding protein | - |
| CHF41_RS01295 | - | 271253..272041 (+) | 789 | WP_119875666.1 | ParB N-terminal domain-containing protein | - |
| CHF41_RS01300 | - | 272067..272297 (+) | 231 | WP_119875667.1 | hypothetical protein | - |
| CHF41_RS01305 | - | 272284..272529 (+) | 246 | WP_162911902.1 | hypothetical protein | - |
| CHF41_RS01310 | - | 272538..273410 (+) | 873 | WP_119875669.1 | phage replisome organizer N-terminal domain-containing protein | - |
| CHF41_RS01315 | - | 273411..273620 (+) | 210 | WP_119875670.1 | hypothetical protein | - |
| CHF41_RS01325 | ssb | 273873..274295 (+) | 423 | WP_119875672.1 | single-stranded DNA-binding protein | Machinery gene |
| CHF41_RS01330 | - | 274305..274637 (+) | 333 | WP_119875673.1 | hypothetical protein | - |
| CHF41_RS01335 | - | 274634..274870 (+) | 237 | WP_119875674.1 | DUF3310 domain-containing protein | - |
| CHF41_RS01340 | - | 274863..275378 (+) | 516 | WP_119875675.1 | DUF1642 domain-containing protein | - |
| CHF41_RS01350 | - | 275715..275912 (+) | 198 | WP_119875677.1 | hypothetical protein | - |
| CHF41_RS01355 | - | 275915..276184 (+) | 270 | WP_119875678.1 | helix-turn-helix transcriptional regulator | - |
| CHF41_RS01360 | - | 276258..276695 (+) | 438 | WP_119875679.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| CHF41_RS01365 | - | 276796..277362 (+) | 567 | WP_119875680.1 | site-specific integrase | - |
| CHF41_RS01370 | - | 277559..277894 (+) | 336 | WP_119875681.1 | HNH endonuclease | - |
| CHF41_RS01375 | - | 278040..279302 (+) | 1263 | WP_119877113.1 | phage portal protein | - |
| CHF41_RS10030 | - | 279295..280521 (+) | 1227 | WP_162911903.1 | polymorphic toxin type 50 domain-containing protein | - |
| CHF41_RS01385 | - | 280521..280709 (+) | 189 | WP_119875682.1 | hypothetical protein | - |
| CHF41_RS01390 | - | 280892..281302 (+) | 411 | WP_119875683.1 | hypothetical protein | - |
| CHF41_RS01395 | - | 281403..282821 (+) | 1419 | WP_119875684.1 | terminase | - |
| CHF41_RS01400 | - | 282896..283357 (+) | 462 | WP_119875685.1 | capsid assembly scaffolding protein Gp46 family protein | - |
| CHF41_RS01405 | - | 283360..284256 (+) | 897 | WP_119875686.1 | phage major capsid protein | - |
| CHF41_RS01410 | - | 284258..284479 (+) | 222 | WP_119875687.1 | hypothetical protein | - |
| CHF41_RS01415 | - | 284567..284962 (+) | 396 | WP_119875688.1 | phage Gp19/Gp15/Gp42 family protein | - |
| CHF41_RS01420 | - | 284949..285287 (+) | 339 | WP_119875689.1 | hypothetical protein | - |
| CHF41_RS01425 | - | 285280..285516 (+) | 237 | WP_119875690.1 | hypothetical protein | - |
| CHF41_RS01430 | - | 285517..285852 (+) | 336 | WP_119875691.1 | hypothetical protein | - |
| CHF41_RS01435 | - | 285864..286433 (+) | 570 | WP_119875692.1 | phage tail protein | - |
| CHF41_RS01440 | - | 286436..286699 (+) | 264 | WP_119875693.1 | hypothetical protein | - |
| CHF41_RS01445 | - | 286711..287100 (+) | 390 | WP_119875694.1 | DUF5361 domain-containing protein | - |
| CHF41_RS01450 | - | 287085..289421 (+) | 2337 | WP_119875695.1 | phage tail protein | - |
| CHF41_RS01455 | - | 289422..290117 (+) | 696 | WP_119875696.1 | phage tail protein | - |
| CHF41_RS01460 | - | 290114..293278 (+) | 3165 | WP_119875697.1 | phage tail spike protein | - |
| CHF41_RS01465 | - | 293294..293527 (+) | 234 | WP_119875698.1 | hypothetical protein | - |
| CHF41_RS01470 | - | 293517..294002 (+) | 486 | WP_119875699.1 | hypothetical protein | - |
| CHF41_RS10265 | - | 294028..294156 (+) | 129 | WP_276308855.1 | hypothetical protein | - |
| CHF41_RS01475 | - | 294190..294483 (+) | 294 | WP_119875700.1 | DUF7365 family protein | - |
| CHF41_RS01480 | - | 294491..294718 (+) | 228 | WP_119875701.1 | phage holin | - |
| CHF41_RS01485 | - | 294842..296200 (+) | 1359 | WP_119875702.1 | peptidoglycan amidohydrolase family protein | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 15781.58 Da Isoelectric Point: 6.4692
>NTDB_id=241544 CHF41_RS01325 WP_119875672.1 273873..274295(+) (ssb) [Streptococcus respiraculi strain HTS25]
MINNVVLVGRMTRDAELSYTQSNQAVATFTLAVNRNFKNQNGEREADFVNCVMWRQQAENLANWTKKGALIGIAGRIQTR
NYENQQGRRVYVTEVIADSFQLLESKSKENKAANQASMEQHAPHFGPASPVDVSEDDFPF
MINNVVLVGRMTRDAELSYTQSNQAVATFTLAVNRNFKNQNGEREADFVNCVMWRQQAENLANWTKKGALIGIAGRIQTR
NYENQQGRRVYVTEVIADSFQLLESKSKENKAANQASMEQHAPHFGPASPVDVSEDDFPF
Nucleotide
Download Length: 423 bp
>NTDB_id=241544 CHF41_RS01325 WP_119875672.1 273873..274295(+) (ssb) [Streptococcus respiraculi strain HTS25]
ATGATTAACAATGTTGTATTAGTGGGTCGGATGACGAGAGATGCGGAGTTGAGCTACACTCAGTCCAATCAAGCGGTAGC
GACATTTACGCTTGCGGTGAATCGTAATTTCAAGAATCAGAATGGTGAGCGAGAGGCGGATTTTGTCAATTGCGTGATGT
GGCGACAACAGGCTGAGAATTTGGCCAATTGGACTAAGAAGGGTGCTTTAATTGGTATTGCTGGTCGGATTCAGACACGG
AACTATGAAAATCAGCAGGGACGACGTGTCTATGTGACAGAAGTGATTGCGGATAGTTTCCAGTTGCTAGAAAGCAAGTC
GAAAGAAAATAAGGCAGCAAATCAGGCTTCGATGGAACAACATGCACCACACTTTGGACCAGCTAGTCCAGTAGATGTGT
CAGAAGATGATTTTCCGTTTTAG
ATGATTAACAATGTTGTATTAGTGGGTCGGATGACGAGAGATGCGGAGTTGAGCTACACTCAGTCCAATCAAGCGGTAGC
GACATTTACGCTTGCGGTGAATCGTAATTTCAAGAATCAGAATGGTGAGCGAGAGGCGGATTTTGTCAATTGCGTGATGT
GGCGACAACAGGCTGAGAATTTGGCCAATTGGACTAAGAAGGGTGCTTTAATTGGTATTGCTGGTCGGATTCAGACACGG
AACTATGAAAATCAGCAGGGACGACGTGTCTATGTGACAGAAGTGATTGCGGATAGTTTCCAGTTGCTAGAAAGCAAGTC
GAAAGAAAATAAGGCAGCAAATCAGGCTTCGATGGAACAACATGCACCACACTTTGGACCAGCTAGTCCAGTAGATGTGT
CAGAAGATGATTTTCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.621 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50 |
100 |
0.614 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.25 |
80 |
0.45 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.857 |
100 |
0.429 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.857 |
100 |
0.429 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.143 |
100 |
0.421 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.143 |
100 |
0.421 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.143 |
100 |
0.421 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.143 |
100 |
0.421 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.143 |
100 |
0.421 |
| ssbA | Streptococcus mutans UA159 |
42.748 |
93.571 |
0.4 |