Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SK637_RS02045 Genome accession   NZ_CP028415
Coordinates   384865..385260 (+) Length   131 a.a.
NCBI ID   WP_033688178.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 379865..390260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS02020 (SK637_00394) - 381405..382478 (+) 1074 WP_033688172.1 N-acetylmuramoyl-L-alanine amidase family protein -
  SK637_RS10220 (SK637_00395) - 382503..382634 (-) 132 WP_033688173.1 hypothetical protein -
  SK637_RS02025 (SK637_00396) - 382728..383027 (+) 300 WP_033688174.1 DUF4651 domain-containing protein -
  SK637_RS02030 (SK637_00397) - 383024..383341 (+) 318 WP_000615777.1 thioredoxin family protein -
  SK637_RS02035 (SK637_00398) ytpR 383357..383983 (+) 627 WP_033688176.1 YtpR family tRNA-binding protein -
  SK637_RS02040 (SK637_00399) - 384026..384787 (+) 762 WP_033688177.1 SDR family NAD(P)-dependent oxidoreductase -
  SK637_RS02045 (SK637_00400) ssbB/cilA 384865..385260 (+) 396 WP_033688178.1 single-stranded DNA-binding protein Machinery gene
  SK637_RS02050 (SK637_00401) groES 385416..385700 (+) 285 WP_033688179.1 co-chaperone GroES -
  SK637_RS02055 (SK637_00402) groL 385716..387338 (+) 1623 WP_033688181.1 chaperonin GroEL -
  SK637_RS02060 (SK637_00403) - 387476..388243 (+) 768 WP_000567567.1 epoxyqueuosine reductase QueH -
  SK637_RS02065 (SK637_00404) - 388466..388999 (-) 534 WP_000775316.1 DUF402 domain-containing protein -
  SK637_RS02070 (SK637_00405) recX 389088..389864 (-) 777 WP_033688183.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14879.80 Da        Isoelectric Point: 5.9409

>NTDB_id=241210 SK637_RS02045 WP_033688178.1 384865..385260(+) (ssbB/cilA) [Streptococcus mitis strain SK637]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISADGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=241210 SK637_RS02045 WP_033688178.1 384865..385260(+) (ssbB/cilA) [Streptococcus mitis strain SK637]
ATGTATAATAAAGTTATCTTAATCGGACGCTTGACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGTGCGACTATTGCAGTCAACCGTCGTTACAAAGACCAAAATGGGGAACGCGAAGCTGACTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACCTTGGCAAGCTACGCAACAAAAGGAAGTCTCATTTCTGCGGACGGAGAACTTCGTACCCGT
CGTTTTGAGAAAAATGGTCAGATGAACTACGTTACCGAAGTACTTGTTACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCCATGCGTGAAAATAATGCGGGGCAAGACTTAGCGGACTTGGTTTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae Rx1

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae D39

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae R6

98.473

100

0.985
  ssbB/cilA Streptococcus mitis SK321

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

96.947

100

0.969
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405