Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Sp14A_RS00830 Genome accession   NZ_CP022601
Coordinates   133870..134265 (+) Length   131 a.a.
NCBI ID   WP_115129551.1    Uniprot ID   A0A345VHC1
Organism   Streptococcus pluranimalium strain 14A0014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 128870..139265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sp14A_RS00795 (Sp14A_01600) - 129305..129976 (+) 672 WP_115129546.1 type II CAAX endopeptidase family protein -
  Sp14A_RS00800 (Sp14A_01610) proC 130021..130791 (-) 771 WP_115129547.1 pyrroline-5-carboxylate reductase -
  Sp14A_RS00805 (Sp14A_01620) pepA 130830..131894 (-) 1065 WP_115129548.1 glutamyl aminopeptidase -
  Sp14A_RS00810 (Sp14A_01640) - 132039..132239 (-) 201 WP_104967117.1 cold-shock protein -
  Sp14A_RS00815 (Sp14A_01650) - 132431..132712 (+) 282 WP_115131131.1 DUF4651 domain-containing protein -
  Sp14A_RS00820 (Sp14A_01660) - 132709..133023 (+) 315 WP_115129549.1 thioredoxin family protein -
  Sp14A_RS00825 (Sp14A_01670) ytpR 133031..133657 (+) 627 WP_115129550.1 YtpR family tRNA-binding protein -
  Sp14A_RS00830 (Sp14A_01680) ssbA 133870..134265 (+) 396 WP_115129551.1 single-stranded DNA-binding protein Machinery gene
  Sp14A_RS00835 (Sp14A_01690) - 134531..135328 (+) 798 WP_115129552.1 Cof-type HAD-IIB family hydrolase -
  Sp14A_RS00840 (Sp14A_01700) - 135409..136374 (+) 966 WP_115129553.1 substrate-binding domain-containing protein -
  Sp14A_RS00845 (Sp14A_01710) - 136374..137678 (+) 1305 WP_115129554.1 sensor histidine kinase -
  Sp14A_RS00850 (Sp14A_01720) - 137688..138368 (+) 681 WP_115129555.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14827.85 Da        Isoelectric Point: 5.9496

>NTDB_id=241033 Sp14A_RS00830 WP_115129551.1 133870..134265(+) (ssbA) [Streptococcus pluranimalium strain 14A0014]
MYNKTILIGRLVATPEMVKTPNDKSVARVTVAVNRRFKSKDGEREADFVNVVFWGRLAETLASYGTKGSLISLDGELRTR
SYEKDGQKHYMTEVLGQSFQLLESRAQRAMRENNVAADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=241033 Sp14A_RS00830 WP_115129551.1 133870..134265(+) (ssbA) [Streptococcus pluranimalium strain 14A0014]
ATGTATAATAAAACGATTTTAATTGGCCGCTTGGTGGCTACGCCTGAGATGGTGAAGACGCCCAATGATAAGTCTGTGGC
ACGTGTGACGGTTGCTGTCAATCGCCGCTTTAAGTCTAAGGATGGCGAGCGTGAAGCAGATTTTGTCAATGTAGTCTTTT
GGGGACGTTTGGCAGAAACGCTAGCCTCTTATGGGACCAAGGGTAGTTTGATTTCATTGGATGGAGAGTTGCGAACGCGC
TCATATGAAAAAGACGGGCAAAAACACTATATGACAGAAGTCTTAGGACAATCCTTCCAATTGCTAGAAAGTCGTGCCCA
ACGTGCCATGCGTGAGAATAACGTAGCAGCAGACTTAGCGGATCTAGTGCTGGAAGAAGAGGAGCTACCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345VHC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

85.496

100

0.855
  ssbB Streptococcus sobrinus strain NIDR 6715-7

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae TIGR4

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus mitis SK321

77.863

100

0.779
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

42.373

90.076

0.382

Multiple sequence alignment