Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CGZ77_RS12810 Genome accession   NZ_CP022527
Coordinates   2351391..2351558 (+) Length   55 a.a.
NCBI ID   WP_369830588.1    Uniprot ID   -
Organism   Neisseria sp. KEM232     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2346391..2356558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ77_RS11700 (CGZ77_11705) - 2349166..2349801 (-) 636 WP_009425150.1 Smr/MutS family protein -
  CGZ77_RS11705 (CGZ77_11710) murI 2349950..2350762 (+) 813 WP_036495486.1 glutamate racemase -
  CGZ77_RS12805 - 2351145..2351387 (+) 243 Protein_2340 IS1595 family transposase -
  CGZ77_RS12810 comE 2351391..2351558 (+) 168 WP_369830588.1 ComEA family DNA-binding protein Machinery gene
  CGZ77_RS11720 (CGZ77_11725) - 2351676..2352533 (-) 858 WP_094031197.1 EamA family transporter -
  CGZ77_RS11725 (CGZ77_11730) - 2352653..2353315 (-) 663 WP_009426480.1 NAD(P)H-dependent oxidoreductase -
  CGZ77_RS11730 (CGZ77_11735) - 2353387..2353938 (+) 552 WP_009426481.1 MarR family winged helix-turn-helix transcriptional regulator -
  CGZ77_RS11735 (CGZ77_11740) - 2354221..2355042 (-) 822 WP_009426482.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  CGZ77_RS11740 (CGZ77_11745) recX 2355231..2355698 (-) 468 WP_009426483.1 recombination regulator RecX Regulator

Sequence

Protein


Download         Length: 55 a.a.        Molecular weight: 5747.61 Da        Isoelectric Point: 10.2483

>NTDB_id=240331 CGZ77_RS12810 WP_369830588.1 2351391..2351558(+) (comE) [Neisseria sp. KEM232]
MADYRKENGDFKSVEDLKKVKGIGEGIFGKLKDEATVGSAPNAKAAKPAAPAAKK

Nucleotide


Download         Length: 168 bp        

>NTDB_id=240331 CGZ77_RS12810 WP_369830588.1 2351391..2351558(+) (comE) [Neisseria sp. KEM232]
ATTGCCGACTACCGTAAGGAAAACGGTGATTTCAAATCGGTTGAGGATTTGAAAAAGGTCAAAGGCATCGGCGAGGGTAT
CTTCGGCAAGCTCAAGGATGAGGCTACCGTCGGTTCCGCACCCAATGCCAAAGCAGCCAAACCCGCCGCACCTGCCGCCA
AAAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

56.364

100

0.564
  comE Neisseria gonorrhoeae MS11

56.364

100

0.564
  comE Neisseria gonorrhoeae MS11

56.364

100

0.564
  comE Neisseria gonorrhoeae MS11

56.364

100

0.564
  comEA/celA/cilE Streptococcus pneumoniae Rx1

56.757

67.273

0.382
  comEA/celA/cilE Streptococcus pneumoniae D39

56.757

67.273

0.382
  comEA/celA/cilE Streptococcus pneumoniae R6

56.757

67.273

0.382
  comEA/celA/cilE Streptococcus mitis SK321

56.757

67.273

0.382
  comEA/celA/cilE Streptococcus mitis NCTC 12261

56.757

67.273

0.382
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

56.757

67.273

0.382
  comEA Lactococcus lactis subsp. cremoris KW2

54.054

67.273

0.364

Multiple sequence alignment