Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CG015_RS03615 Genome accession   NZ_CP022468
Coordinates   743493..744719 (-) Length   408 a.a.
NCBI ID   WP_129532243.1    Uniprot ID   -
Organism   Vibrio anguillarum strain MHK3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 738493..749719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG015_RS03575 (CG015_03565) rpsP 738832..739080 (+) 249 WP_129532241.1 30S ribosomal protein S16 -
  CG015_RS03580 (CG015_03570) rimM 739110..739664 (+) 555 WP_013857691.1 ribosome maturation factor RimM -
  CG015_RS03585 (CG015_03575) trmD 739692..740438 (+) 747 WP_010319524.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  CG015_RS03590 (CG015_03580) rplS 740480..740833 (+) 354 WP_010319525.1 50S ribosomal protein L19 -
  CG015_RS03595 (CG015_03585) yacG 740914..741111 (-) 198 WP_010319526.1 DNA gyrase inhibitor YacG -
  CG015_RS03600 (CG015_03590) zapD 741201..741941 (-) 741 WP_013857689.1 cell division protein ZapD -
  CG015_RS03605 (CG015_03595) coaE 741974..742582 (-) 609 WP_047688854.1 dephospho-CoA kinase -
  CG015_RS03610 (CG015_03600) pilD 742573..743454 (-) 882 WP_129532242.1 prepilin peptidase Machinery gene
  CG015_RS03615 (CG015_03605) pilC 743493..744719 (-) 1227 WP_129532243.1 type II secretion system F family protein Machinery gene
  CG015_RS03620 (CG015_03610) pilB 744762..746450 (-) 1689 WP_129532244.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CG015_RS03625 (CG015_03615) pilA 746460..746885 (-) 426 WP_026027561.1 pilin Machinery gene
  CG015_RS03630 (CG015_03620) nadC 747145..748032 (-) 888 WP_017043701.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CG015_RS03635 (CG015_03625) ampD 748157..748708 (+) 552 WP_207204973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CG015_RS03640 (CG015_03630) fldB 748730..749248 (-) 519 WP_013857680.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45309.68 Da        Isoelectric Point: 10.4379

>NTDB_id=239714 CG015_RS03615 WP_129532243.1 743493..744719(-) (pilC) [Vibrio anguillarum strain MHK3]
MNTKIKSELKNYRWKGINSSGKKVSGQTLALTEPEVRDKLKEQHIQIKKIKKGGVSFITRLTHRVKARDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILSQVTKGVEAGTPISKAMRTASIHFDTLYVDLIHTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPTMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQSYSLWVLIIIILTTIA
VKTVRQKSFLIRLKTSRLGLKFPILGGVIGKASIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=239714 CG015_RS03615 WP_129532243.1 743493..744719(-) (pilC) [Vibrio anguillarum strain MHK3]
ATGAACACAAAAATCAAATCAGAACTCAAAAATTATCGTTGGAAAGGCATCAATAGTTCGGGCAAAAAAGTATCTGGCCA
AACTCTCGCTTTAACCGAACCGGAAGTGCGTGACAAACTTAAAGAACAGCACATTCAGATCAAAAAAATCAAAAAAGGGG
GCGTCTCTTTTATCACCCGCTTGACTCATCGCGTGAAGGCCAGAGACATCACCATTCTGACACGCCAATTGGCGACCATG
CTGACCACGGGCGTGCCCATCGTGCAAGCCTTAAAACTGGTCGGAGATAACCATCGCAAAGCCGAAATGAAATCCATTTT
GTCGCAAGTCACCAAAGGGGTTGAAGCCGGAACGCCAATTTCCAAAGCGATGCGTACCGCCAGCATTCATTTCGATACCT
TGTATGTTGATCTCATTCACACAGGCGAACAGTCAGGTAACTTGGCTGAAGTGTTTGAGCGGCTAGCGACTTATCGAGAA
AAAAGTGAACAACTGCGCGCTAAAGTCATTAAAGCGCTCATCTACCCAACCATGGTGGTGTTGGTCGCGTTAGGTGTTTC
TTACTTAATGCTTACTATGGTGATCCCTGAGTTTGAAAGCATGTTCAAAGGATTCGGAGCCGAATTACCTTGGTTTACAC
AGCAAGTATTGAAACTCTCTCATTGGGTGCAAAGTTACAGTTTGTGGGTACTCATCATCATAATCCTTACCACAATTGCC
GTGAAAACAGTACGCCAAAAATCTTTTTTAATACGCTTAAAAACCAGCCGATTAGGATTAAAGTTTCCCATTCTTGGCGG
GGTGATAGGCAAAGCCTCTATTGCTAAATTCAGTCGCACACTCGCCACCAGCTTTAGTGCAGGCATTCCGATTTTAGCTA
GCTTAAAAACCACCGCCAAAACCGCTGGCAATGTCCATTTTGAGACGGCGATTAATGAGGTCTATCGTGATACGGCAGCC
GGTATGCCAATGTATATTGCGATGCGTAATACCGAAGCCTTTCCTGAAATGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCAGGCCGATTGGATGACATGCTCAATAAAGTCGCCACCATTTACGAATTTGAAGTCGATAATACCGTCGATAACTTAG
GCAAAATTCTCGAACCATTGATCATTGTCTTTTTGGGTACGGTGGTCGGCGGTTTAGTGGTGGCAATGTACTTGCCCATC
TTTAACTTAATGAGTGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

88.5

98.039

0.868
  pilC Vibrio campbellii strain DS40M4

75

99.02

0.743
  pilC Acinetobacter baylyi ADP1

42.211

97.549

0.412
  pilC Acinetobacter baumannii D1279779

40.931

100

0.409
  pilC Pseudomonas stutzeri DSM 10701

41.162

97.059

0.4
  pilG Neisseria gonorrhoeae MS11

40.299

98.529

0.397
  pilG Neisseria meningitidis 44/76-A

39.95

98.775

0.395
  pilC Legionella pneumophila strain ERS1305867

39.651

98.284

0.39

Multiple sequence alignment