Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CG015_RS03625 | Genome accession | NZ_CP022468 |
| Coordinates | 746460..746885 (-) | Length | 141 a.a. |
| NCBI ID | WP_026027561.1 | Uniprot ID | - |
| Organism | Vibrio anguillarum strain MHK3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 741460..751885
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CG015_RS03605 (CG015_03595) | coaE | 741974..742582 (-) | 609 | WP_047688854.1 | dephospho-CoA kinase | - |
| CG015_RS03610 (CG015_03600) | pilD | 742573..743454 (-) | 882 | WP_129532242.1 | prepilin peptidase | Machinery gene |
| CG015_RS03615 (CG015_03605) | pilC | 743493..744719 (-) | 1227 | WP_129532243.1 | type II secretion system F family protein | Machinery gene |
| CG015_RS03620 (CG015_03610) | pilB | 744762..746450 (-) | 1689 | WP_129532244.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CG015_RS03625 (CG015_03615) | pilA | 746460..746885 (-) | 426 | WP_026027561.1 | pilin | Machinery gene |
| CG015_RS03630 (CG015_03620) | nadC | 747145..748032 (-) | 888 | WP_017043701.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| CG015_RS03635 (CG015_03625) | ampD | 748157..748708 (+) | 552 | WP_207204973.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| CG015_RS03640 (CG015_03630) | fldB | 748730..749248 (-) | 519 | WP_013857680.1 | flavodoxin FldB | - |
| CG015_RS03645 (CG015_03635) | xerD | 749401..750309 (+) | 909 | WP_013857679.1 | site-specific tyrosine recombinase XerD | - |
| CG015_RS03650 (CG015_03640) | - | 750323..751096 (+) | 774 | WP_013857678.1 | thioredoxin fold domain-containing protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14527.80 Da Isoelectric Point: 9.0318
>NTDB_id=239716 CG015_RS03625 WP_026027561.1 746460..746885(-) (pilA) [Vibrio anguillarum strain MHK3]
MNTNKKTKQSGFTLIELMIVVAIIGVLSAIAVPAYKNYVAKSEVASAIATMKALITPAEITYQDKGILATATALTDLGIS
AGSNSLGTISIPIDNNIKFLFGTKSAINGAYLTFSRDANTGWSCKATSGGVSSMPAIDGCS
MNTNKKTKQSGFTLIELMIVVAIIGVLSAIAVPAYKNYVAKSEVASAIATMKALITPAEITYQDKGILATATALTDLGIS
AGSNSLGTISIPIDNNIKFLFGTKSAINGAYLTFSRDANTGWSCKATSGGVSSMPAIDGCS
Nucleotide
Download Length: 426 bp
>NTDB_id=239716 CG015_RS03625 WP_026027561.1 746460..746885(-) (pilA) [Vibrio anguillarum strain MHK3]
ATGAACACAAATAAGAAAACGAAACAAAGTGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCAATTATTGGCGTACT
CTCTGCGATTGCCGTTCCTGCTTATAAAAACTATGTAGCTAAAAGTGAAGTAGCTTCGGCAATAGCAACAATGAAAGCCT
TAATTACTCCTGCCGAAATCACCTATCAAGACAAAGGTATTTTGGCCACTGCTACTGCGCTTACTGACTTAGGAATATCA
GCAGGTTCAAACAGTTTAGGAACCATATCCATCCCAATTGACAACAATATAAAATTCTTATTTGGAACCAAAAGTGCAAT
CAATGGTGCATACCTAACATTTTCACGAGATGCAAATACAGGTTGGTCATGTAAAGCGACTTCTGGTGGTGTAAGTAGTA
TGCCAGCAATTGATGGCTGCTCATAA
ATGAACACAAATAAGAAAACGAAACAAAGTGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCAATTATTGGCGTACT
CTCTGCGATTGCCGTTCCTGCTTATAAAAACTATGTAGCTAAAAGTGAAGTAGCTTCGGCAATAGCAACAATGAAAGCCT
TAATTACTCCTGCCGAAATCACCTATCAAGACAAAGGTATTTTGGCCACTGCTACTGCGCTTACTGACTTAGGAATATCA
GCAGGTTCAAACAGTTTAGGAACCATATCCATCCCAATTGACAACAATATAAAATTCTTATTTGGAACCAAAAGTGCAAT
CAATGGTGCATACCTAACATTTTCACGAGATGCAAATACAGGTTGGTCATGTAAAGCGACTTCTGGTGGTGTAAGTAGTA
TGCCAGCAATTGATGGCTGCTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
54.861 |
100 |
0.56 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.065 |
100 |
0.418 |
| pilA | Vibrio cholerae strain A1552 |
38.065 |
100 |
0.418 |
| pilA | Vibrio cholerae C6706 |
38.065 |
100 |
0.418 |
| pilA | Pseudomonas aeruginosa PAK |
43.182 |
93.617 |
0.404 |