Detailed information NTG0239713

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CG015_RS03610
• Genome accession: NZ_CP022468
• Coordinates: 742573..743454 (-)
• Length: 293 a.a.
• NCBI ID: WP_129532242.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain MHK3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 737573..748454

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG015_RS03575 (CG015_03565)	rpsP	738832..739080 (+)	249	WP_129532241.1	30S ribosomal protein S16	-
CG015_RS03580 (CG015_03570)	rimM	739110..739664 (+)	555	WP_013857691.1	ribosome maturation factor RimM	-
CG015_RS03585 (CG015_03575)	trmD	739692..740438 (+)	747	WP_010319524.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
CG015_RS03590 (CG015_03580)	rplS	740480..740833 (+)	354	WP_010319525.1	50S ribosomal protein L19	-
CG015_RS03595 (CG015_03585)	yacG	740914..741111 (-)	198	WP_010319526.1	DNA gyrase inhibitor YacG	-
CG015_RS03600 (CG015_03590)	zapD	741201..741941 (-)	741	WP_013857689.1	cell division protein ZapD	-
CG015_RS03605 (CG015_03595)	coaE	741974..742582 (-)	609	WP_047688854.1	dephospho-CoA kinase	-
CG015_RS03610 (CG015_03600)	pilD	742573..743454 (-)	882	WP_129532242.1	prepilin peptidase	Machinery gene
CG015_RS03615 (CG015_03605)	pilC	743493..744719 (-)	1227	WP_129532243.1	type II secretion system F family protein	Machinery gene
CG015_RS03620 (CG015_03610)	pilB	744762..746450 (-)	1689	WP_129532244.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CG015_RS03625 (CG015_03615)	pilA	746460..746885 (-)	426	WP_026027561.1	pilin	Machinery gene
CG015_RS03630 (CG015_03620)	nadC	747145..748032 (-)	888	WP_017043701.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32918.23 Da
• Isoelectric Point: 7.2157

>NTDB_id=239713 CG015_RS03610 WP_129532242.1 742573..743454(-) (pilD) [Vibrio anguillarum strain MHK3]
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIVPPEGQLTLSVPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG

Nucleotide

• Length: 882 bp

>NTDB_id=239713 CG015_RS03610 WP_129532242.1 742573..743454(-) (pilD) [Vibrio anguillarum strain MHK3]
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGTGCCACCGGAAGGGCAACTCACGCTCAGTGTCCCTCGTTCTAGCTGCCCACACTGTGATACGCCAATCCGTATTATT
GATAATATTCCGCTACTCAGTTGGCTCTTTTTAAAAGGGAAATGTTCCCGTTGCCAAGGCCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTGTTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCAGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTTCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATCCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	77.083	98.294	0.758
pilD	Vibrio campbellii strain DS40M4	76.471	98.635	0.754
pilD	Acinetobacter nosocomialis M2	56.458	92.491	0.522
pilD	Acinetobacter baumannii D1279779	56.089	92.491	0.519
pilD	Neisseria gonorrhoeae MS11	46.552	98.976	0.461